Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq172 165 1e-35 seq41 127 4e-24 seq14 114 2e-20 seq1 114 2e-20 seq15 98.7 2e-15 seq3430 95.1 2e-14 >seq172 Length=1724251 Score = 165 bits (182), Expect = 1e-35 Identities = 148/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||||||||| | || ||| | || |||||||| || ||||||||||| | | Sbjct 1092403 AATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGACG 1092344 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || |||||||| |||||||| || || || |||||| ||||||||| ||||| Sbjct 1092343 TTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTTCAATAGT 1092284 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| | ||||||||| || || |||||||||||||| || ||||| | |||||||| Sbjct 1092283 ATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAATATCTG 1092224 Query 172067 CATTTT 172072 ||| || Sbjct 1092223 CATCTT 1092218 >seq41 Length=919255 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||| ||| || | || | ||| || || | || || ||||| ||||| || Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || ||||||||||||||||| || || || ||||||||||| || || Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| || ||||| ||||| ||| ||||| |||||||| || | ||| ||| Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| || ||||| || || | ||||| | || || |||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || | ||| | ||| | || || |||||||||||| Sbjct 762533 ATTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCA 762592 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||| ||||||||||||||| || || || |||||||| || Sbjct 762593 GAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGA 762652 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| ||| || || |||||||| || | ||| Sbjct 762653 GGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCA 762712 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||| || || | || || | ||| || ||||| Sbjct 762713 ACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || | ||| | ||| | || || |||||||||||| Sbjct 762761 ATACCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCG 762820 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| || | ||| || |||||||| || || || ||||| || || Sbjct 762821 GAGAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGC 762880 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| ||||| ||| || || |||||||| || | ||| Sbjct 762881 GGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCA 762940 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| || || | ||| || | ||| |||||||| Sbjct 762941 ACTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq14 Length=11649563 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| | |||| ||||||||||| |||| || || |||||||||||||||| Sbjct 1883926 CCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAT 1883867 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || || |||||||| |||||||| |||||||| ||||| || ||||| Sbjct 1883866 AAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 1883807 Query 171963 ATTCCT 171968 |||||| Sbjct 1883806 ATTCCT 1883801 >seq1 Length=17153651 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||||| || |||||||| | || | |||||| || ||||||||||| Sbjct 7345518 CCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 7345459 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | | || || | |||||| |||||||| || || | ||| ||||| || || Sbjct 7345458 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345399 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| || || || ||| ||| ||||| ||| || || | || ||| Sbjct 7345398 ATACCCTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACT 7345339 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||||| ||||||||| | ||||||| | ||||||||| Sbjct 7345338 TCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq15 Length=11467329 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/124 (78%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 39145 AACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 39204 ||||| | || ||||| |||| ||||||||||| || | |||||||||||| ||||| | Sbjct 5182663 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 5182605 Query 39205 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAA 39264 |||| ||||| || || | |||||||||| |||||| ||||| ||||| |||| Sbjct 5182604 TTTTCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 5182545 Query 39265 ATGC 39268 |||| Sbjct 5182544 ATGC 5182541 >seq3430 Length=546 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 || ||||| ||||| || ||| ||| ||||| ||| ||||| || | ||||||||| Sbjct 545 CCCTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTATCAGAAGCTTCTACTTCA 486 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||||||| ||||| || ||||||||||||| || |||||||| || Sbjct 485 AGAGTAATAGTTTTTCCTGTTAATGTTTTAACAAAGATCTGCATGTT 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905072538652200