Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7 104 7e-17 seq12 102 2e-16 seq651 93.3 1e-13 seq15 86.0 2e-11 >seq7 Length=18145390 Score = 104 bits (114), Expect = 7e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 ||||||| | ||||||||||| || || ||||| || | | |||||||| || || | Sbjct 11144460 CCTTTTTCTTCCAACAGCATCGATCTCATCAATAAATAATATACACGGAGCATGTTTCCG 11144519 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||| || | |||| || | |||| |||| |||||| ||||||| | ||| Sbjct 11144520 TGCCAATGCGAACATATCTCGAACTCTTGATGGACCAACACCAACGAACATTTCCAAAAA 11144579 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| ||| || | |||||||||||| || ||| || | |||| Sbjct 11144580 CTCAGAACCTGATACACTAATAAAAGGTACATTTGCTTCACCAGCTGTAGCTTTAGCCAA 11144639 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || ||||| || || ||||| || Sbjct 11144640 TAACGTTTTACCAGTACCCGGTGGACC 11144666 >seq12 Length=12868931 Score = 102 bits (112), Expect = 2e-16 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || |||||||||||||| ||||||||| | |||||||| || ||| Sbjct 8703478 TCCATAGCTTTTATCAAACGACGCTGAATGTAACCAGTTTCTGCAGTTTTTACGGCAGTA 8703537 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| |||||||| ||||| | | ||| || ||| | || Sbjct 8703538 TCGATAAGACCCTCACGACCTCCCATAGCGTGGAAATAAAACTCAGATGG-CGTCAAACC 8703596 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| | ||| | |||||||| || | | || || || ||| ||| |||| Sbjct 8703597 AGCAAGGTACGAGTTTTCAACGAATCCTCTGGATTCCGGACCATAATCGTCCTTAATAAA 8703656 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||||||| || || || | | || | |||||||| || || || ||||| ||||| Sbjct 8703657 ATGTGGCAATGTTCTTTTACGAAAACCAAACGGGATACGTTTACCTTCTACGTTTTGCTG 8703716 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATT 302843 || | || | ||| | ||| || || || Sbjct 8703717 ACCGACACAAGCAATAACCTGAGAGATGTT 8703746 Score = 84.2 bits (92), Expect = 6e-11 Identities = 115/160 (72%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCAACGTTC 303696 |||||||||||||| || ||||||||||| |||||||| || ||| || ||| Sbjct 8704573 TGTAAATTCATCTCGTCGCCGTCAAAATCGGCATTATAAGGAGACGTGCAACTAAGATTC 8704632 Query 303697 ATCCGGAAAGTATCACCCTGCATCATAACAC--GGGCTTTATGACACATCATAGACATTC 303754 || ||||| ||| || ||| ||||| | |||||| ||||||| ||| Sbjct 8704633 ATACGGAATGTA-----CTCCATGGCAACACTTTTACCCTATGACCCATCATACTCATCT 8704687 Query 303755 TGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794 ||||||| ||||| || |||||||||| || ||||||| Sbjct 8704688 TGTGTAGTGTTGGTTGCCGATTGAAAATTACTAGGTCACC 8704727 >seq651 Length=1554602 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983 ||||||||| |||| || | ||||| |||| || || || | | |||| ||| Sbjct 151282 CATACCATAAAAAAGTTTATATTTTTTGCCATTTTTTTCTATACAATCACCTCCGCATTC 151341 Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043 ||| ||||||||||| | ||| || ||||||| ||||| || || |||| || ||||| Sbjct 151342 ATCATGTCCCGCAAACATACCACCTGCCATTACAAAATCTGCTCCAGCACCAAAAGCTTT 151401 Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATCACTAA 107081 || | |||||| || |||||| |||||||| |||| Sbjct 151402 TGCTAAATCACCTGGACAAGTACAACCACCATC-CTAA 151438 >seq15 Length=11467329 Score = 86.0 bits (94), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| || |||||||| ||||| || || ||||| || | || || ||| Sbjct 10911392 ATAGTCATACGCGATGGGATAGCATGAGGATTAATTATAATGTCTGGCGTGAGACCTTCA 10911333 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 | || |||||||| | || || || || ||||| ||| || |||||||| || Sbjct 10911332 CATGAAAATGGCATATCTTCTTG-TCTGTATTGAATTCCACAAGTACCTTTTTGTCCATG 10911274 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 |||||| || ||||||||||| ||| ||||| || || | ||| | ||||| Sbjct 10911273 CCGAGAAGCAAATTTATCACCAATTTGTGGAATACGAACGCTGCGTACGCGTATTTTACA 10911214 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || || || || |||| ||| Sbjct 10911213 AAATTTATATCCTTCACTGTT 10911193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471711827368233