Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq382 100 4e-16 >seq382 Length=5783 Score = 100 bits (110), Expect = 4e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 172407 TTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 172466 |||||| |||||| ||| || || || | ||| |||||| | | | | ||| | | Sbjct 922 TTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATA 981 Query 172467 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 172526 ||| ||| || |||| ||||| || |||| | || || || || | ||||||||| Sbjct 982 TGGGATGCAAACAGTTCACGTGAGTTCCTAGACTCTTGTGGCTTCACAAATAGAAAAGAA 1041 Query 172527 GGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATC-GA 172585 || |||||||| || ||||||||||||||||||||||| || | ||| || | | Sbjct 1042 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACATTATGGTG--CAAAGTACCAAA 1099 Query 172586 CTGT-GATACAGATTACACAGGACAAGG 172612 | | ||||||||||| | |||||||| Sbjct 1100 ATATGGATACAGATTATAGTGGACAAGG 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632445254572920