Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 176 4e-39 seq41 145 7e-30 seq172 125 6e-24 seq6 100 3e-16 seq3430 98.7 9e-16 seq14 89.7 5e-13 >seq1 Length=17153651 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| ||||||| |||| || ||||||||||| || ||||| ||||| | Sbjct 7345064 ATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCT 7345123 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| |||||||||||||||||| || || ||||| || || Sbjct 7345124 GACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7345183 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || ||||| || || ||| |||| | || ||||||||| Sbjct 7345184 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTATAAC 7345243 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||| || || |||||| || | |||||||| Sbjct 7345244 ATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACTTCGCGGAGG 7345290 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||| | |||||||||| || |||||| | ||||| | ||||| || | || Sbjct 7345292 ATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCCC 7345351 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| |||||||| || ||||| || || ||||| || || Sbjct 7345352 GACACAATAGAGAATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCAG 7345411 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || ||||| || || ||| |||| | |||||||||||| Sbjct 7345412 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7345471 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||||| || || |||||| || | || ||||| Sbjct 7345472 ATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGACTTCGTGGAGG 7345518 >seq41 Length=919255 Score = 145 bits (160), Expect = 7e-30 Identities = 175/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || |||||||| || || ||||| ||||| || Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| ||||| || |||||||| |||||||| ||||| || || Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATCCCTCCAGACCA 762644 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATA 24881 |||| | ||||||||||| || ||||| ||||| ||| || ||| | || ||||||| Sbjct 762643 ACAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATG-GACGTACACTCTCTGATTATA 762585 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTGGTGTTGCGATTGCGCGGAGG 24930 | ||||||||||||||||| || || |||| | || || || | ||||| Sbjct 762584 ATATTCAAAAGGAATCGACTCTTCATCTTGTTCTT-CGTCTGAGAGGAGG 762536 Score = 136 bits (150), Expect = 4e-27 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || |||||||| || || ||||| ||||| || Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| ||||| || |||||||| |||||||| || || ||||| Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATTCCGCCGGATCA 762872 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||||||||| || || || || || || | | | || |||||||| Sbjct 762871 ACAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAA 762812 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||||||||| || || |||| Sbjct 762811 TATTCAAAAGGAATCGACTCTTCATCTTG 762783 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || || ||||| ||||| | Sbjct 762534 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCT 762475 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||| || |||||||| |||||||| ||||| || ||| Sbjct 762474 GATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 762415 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || ||||| |||| ||| | | | | || ||||| || Sbjct 762414 CAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAAT 762355 Query 24884 ATTCAAAAGGAATCGAC 24900 || ||||||||||| || Sbjct 762354 ATACAAAAGGAATCAAC 762338 >seq172 Length=1724251 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| | || |||||||| || || || ||||||||||| | Sbjct 1092220 GATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATC 1092279 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| |||||| || ||||| ||||| |||||||| || || ||||| Sbjct 1092280 AGATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGATCA 1092339 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || ||||| || || || |||| ||| | | ||||||||||||| Sbjct 1092340 GCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAA 1092399 Query 24883 CATTCAAAA 24891 |||||||| Sbjct 1092400 TATTCAAAA 1092408 >seq6 Length=12724418 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 139081 ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCA 139140 || || |||| ||||| || || | ||| || || | |||| || ||||| | | Sbjct 10925540 ATTGAAGCTAAATTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTA 10925481 Query 139141 CACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCA 139200 || |||||||| | |||||||| ||||||||||| ||||| ||| || |||||| | Sbjct 10925480 CATAAATTACTGCTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGA 10925421 Query 139201 TCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||||| |||||||| || || || || ||||| ||||| Sbjct 10925420 TCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAACTTG 10925383 >seq3430 Length=546 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| ||||||| |||| || ||||||||||| || ||||||||||| | Sbjct 442 ATGCAGATCTTTGTTAAAACATTAACAGGAAAAACTATTACTCTTGAAGTAGAAGCTTCT 501 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 || ||| |||| | || ||| ||||||||||||||||| || Sbjct 502 GATACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAGGG 545 >seq14 Length=11649563 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||||| || || ||||||||| | || |||||||| || ||||| | |||||| || Sbjct 1883801 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 1883860 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || | ||||||||||| ||||| |||||||| ||| |||| || ||| | || || Sbjct 1883861 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTT 1883917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449866056554520