Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9 224 8e-54 >seq9 Length=15655298 Score = 224 bits (248), Expect = 8e-54 Identities = 290/396 (73%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTT-TTAGCGGACACGAT 34313 |||||||| ||||||||||| || || || | || | | |||| || | | || || Sbjct 12706484 CCGTGATAGCCGCATGCTTTACATCCTTGCGAAATGGT-TCCTTTCTTCGAGCTGACCAT 12706426 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 ||||| ||||| || || || || |||| || || ||| | ||||||||||| ||||| Sbjct 12706425 CAGCTCCGTCTCGGGATTATCGCAAGCCGGGCATAATACATATTTGCGGATGAATCCATC 12706366 Query 34374 AAGCAGGTCCTGTAACTTAACGGAG--TCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 |||| || ||||| || || || ||||| || || || || ||||||| ||||||| Sbjct 12706365 CAGCAAATCTTGTAATTT--CGTAGCATCGTGCGATCCATTTACAATGAATCTTTCGTTT 12706308 Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||| |||||| ||| || || || || || || || |||||||| || || || || | Sbjct 12706307 TTGAAATCGAACTGAGTCTGTGCTCCAAGTTCACAGCCGAAGTATTTGGTAGGATAGGTA 12706248 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || | |||| ||| ||||||| ||| ||| || ||||| || || ||||| || Sbjct 12706247 GCAGGTCTCCCAATCGCTTTGGCGACATCGACCATATTCACGATTACCGTTTTGATACCA 12706188 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| || || || || || ||| || |||||||| |||||||| ||||| || Sbjct 12706187 TTTCCCTTGCCCTCCACTTTAGCTTGGATCCGTGGCATTTTATAGCGGTAAAACGCATCG 12706128 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||||| ||||| || || ||| ||||||| ||| Sbjct 12706127 CTGACATTACGGTTTACATTGACACTCCCCATGGTG 12706092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412813378277237