Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq172 129 9e-25 seq14 123 4e-23 seq41 120 5e-22 >seq172 Length=1724251 Score = 129 bits (142), Expect = 9e-25 Identities = 144/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || || || ||||| || || |||| |||||| ||| | Sbjct 1092222 TGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA- 1092280 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||||||||| |||||| || || ||||| |||||||| ||||| Sbjct 1092281 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1092340 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || |||||||| || || ||||| || ||| | || | ||||||||||| Sbjct 1092341 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1092400 Query 146211 ATACAAAAAG 146220 || ||||||| Sbjct 1092401 ATTCAAAAAG 1092410 >seq14 Length=11649563 Score = 123 bits (136), Expect = 4e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| |||||||||||| | || ||||| || ||||||||||| ||| ||| Sbjct 1883801 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 1883860 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| ||| ||||||||||||| || || ||||| || | |||||||| |||| ||||| Sbjct 1883861 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAG 1883920 Query 146252 AGGAGG 146257 ||| || Sbjct 1883921 AGGTGG 1883926 >seq41 Length=919255 Score = 120 bits (132), Expect = 5e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| | |||||||||||||| ||| |||| || ||| | | Sbjct 762533 TGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCTG 762474 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||||| ||| || ||||| ||||| || || |||| Sbjct 762473 ATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAAC 762414 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || || || ||||||||||| || ||| | || | | ||||| |||| Sbjct 762413 AGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAATA 762354 Query 146212 TACAAAAAGAATCGAC 146227 ||||||| ||||| || Sbjct 762353 TACAAAAGGAATCAAC 762338 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||| ||||| || ||| |||| || ||| | || Sbjct 762761 TGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCCG 762702 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || ||| ||||| ||| || ||||| || || || || |||| Sbjct 762701 ATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAAC 762642 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| ||||||||| | || ||| | || | | |||||||||| Sbjct 762641 AAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAATA 762582 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||||||| | ||| | || | || | |||||||| Sbjct 762581 TTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGG 762536 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||| | ||||||||||| || || |||| || ||| | || Sbjct 762989 TGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCG 762930 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || ||| ||||| ||| || ||||| ||||| || ||||||| Sbjct 762929 ATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAAC 762870 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| || || ||| | || || | ||| | | |||||||||| Sbjct 762869 AAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAATA 762810 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| ||||||||| | ||| Sbjct 762809 TTCAAAAGGAATCGACTCTTCAT 762787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786111279908280