Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 seq41 158 9e-34 seq172 127 2e-24 seq3430 105 5e-18 seq14 82.4 6e-11 >seq1 Length=17153651 Score = 178 bits (196), Expect = 1e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| ||||| || || ||||| || ||||||||||||| || || | ||| Sbjct 7345276 CAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATC 7345217 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||||||||||||| | ||||| | ||||| || || ||||||||||||||||| Sbjct 7345216 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7345157 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 ||| | ||| ||| ||| | |||| ||||||||| ||| ||||||||||| ||||| Sbjct 7345156 TTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 7345097 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || |||||||||||||| || |||||||| || Sbjct 7345096 TTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| ||||| || ||||| ||||| || ||||||||||| | || || | ||| Sbjct 7345504 CAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7345445 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||||||||||||| | ||||| | ||||| || || |||||||||||||| || Sbjct 7345444 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTC 7345385 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| | |||| ||||| | || || ||||| | || || | Sbjct 7345384 ATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGC 7345325 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| ||||| | ||||||||| | ||||||||| Sbjct 7345324 TTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq41 Length=919255 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || || | |||||| || ||||| |||||||| |||||||| | Sbjct 762535 TCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGA 762594 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || |||||||| |||||| | ||||| ||||| || || || || Sbjct 762595 GAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGG 762654 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| |||||||| ||| || | || | ||| || ||| ||| | Sbjct 762655 GATTCCTTCCTTGTCTTG-AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAA 762713 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||||||||||| || || | ||| || || || || ||||| Sbjct 762714 CTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 147 bits (162), Expect = 2e-30 Identities = 165/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||| | || ||||| ||||| || || ||||| | || ||||| Sbjct 762319 ACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCC 762378 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| || || || || || ||||| || || || Sbjct 762379 ATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTT 762438 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| ||| ||| | || | ||| |||||| ||| ||||||||||||| Sbjct 762439 GTCTTG-AATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTA 762497 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| || || | |||||| ||||| || |||||| Sbjct 762498 TTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 143 bits (158), Expect = 2e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| || ||||| |||||||| |||||||| | | || || Sbjct 762776 CGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCG 762835 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || |||||| | ||||| ||||| |||||||||||||| || || ||| Sbjct 762836 TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTG 762895 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||||| ||| || | || | ||| || ||| ||| |||||||| || || Sbjct 762896 TCTTG-AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGAT 762954 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || | || || || || |||||||| Sbjct 762955 AGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq172 Length=1724251 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||||||||| |||||||| | | || || ||| || | ||| || |||||| | | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 | | | ||||||||| || ||||| || || ||||| || | ||| ||| ||| ||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||| || || |||||||||||| || || ||||| ||||| || ||||| |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 29777 ATATCTGCATTTT 29789 |||||||||| || Sbjct 1092230 ATATCTGCATCTT 1092218 >seq3430 Length=546 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||||||||||||||| | || ||| ||| | |||| || |||||| ||||||||| Sbjct 546 ACCCTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTATCAGAAGCTTCTACTTC 487 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||| |||||||| || ||||| ||||||||||| |||||||| || Sbjct 486 AAGAGTAATAGTTTTTCCTGTTAATGTTTTAACAAAGATCTGCATGTT 439 >seq14 Length=11649563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||| || || |||||||| ||| ||| |||| | ||| || || || || Sbjct 1883448 TACCTTCTTTATCCTG-AATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACC 1883390 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| ||||| ||||| || || |||||||||||||| Sbjct 1883389 TCAAGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCAT 1883343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385192866535869