Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq382 93.3 5e-14 seq15 87.8 2e-12 >seq382 Length=5783 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 168534 TTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 168593 |||||| |||| | ||| || || || | ||| |||||| | | | | ||| | | Sbjct 922 TTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATA 981 Query 168594 TGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAA 168653 ||| | | || |||| ||||| || |||| | ||||| || || | ||||||||| Sbjct 982 TGGGATGCAAACAGTTCACGTGAGTTCCTAGACTCTTGTGGCTTCACAAATAGAAAAGAA 1041 Query 168654 GGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 || |||||||| || ||||||||||||||||||||||| Sbjct 1042 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACAT 1080 >seq15 Length=11467329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCA-GGAATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || |||| || ||||||||| ||| || |||| | ||||||| |||||||| Sbjct 10911238 CGTATTCCACAAATTGGTGATAAATTTGCTTCTCGGCATGGAC-AAAAAGGTACTTGTGG 10911296 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || || ||||||||||||||||||| || | |||| | ||||| ||||| Sbjct 10911297 AATTCAATACAGACAAGAAGATATGCCATTTTCATGTGAAGGTCTCACGCCAGACATTAT 10911356 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||| ||||| | ||||| ||| ||| | |||| Sbjct 10911357 AATTAATCCTCATGCTATCCCATCGCGTATGACTATTGGTCACTTAATTG 10911406 Score = 82.4 bits (90), Expect = 1e-10 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 193013 TCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGA 193072 |||| ||| ||||| ||| ||||||||| || ||||||||||||||||||||||| Sbjct 10910704 TCCAGCTGGAATTAACAGTATAGTTGCTATATTATGTTATACTGGTTATAATCAAGAAGA 10910763 Query 193073 CAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 193115 |||| | ||||||||| | || |||| ||||| || ||| Sbjct 10910764 CAGTGTCATTTTAAATGCTAGTGCTGTTGAGAGAGGTTTCTTT 10910806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635133066110520