Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 6e-14 seq382 86.0 8e-12 >seq15 Length=11467329 Score = 93.3 bits (102), Expect = 6e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 201625 ||||| ||| ||||||| ||||||||| |||| || |||| | ||||||| |||||||| Sbjct 10911238 CGTATTCCACAAATTGGTGATAAATTTGCTTCTCGGCATGGAC-AAAAAGGTACTTGTGG 10911296 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGGATATTAT 201685 || || ||||||||||||||| ||| || ||| | || || || ||||| Sbjct 10911297 AATTCAATACAGACAAGAAGATATGCCATTTTCATGTGAAGGTCTCACGCCAGACATTAT 10911356 Query 201686 AATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTG 201735 ||| ||||| || ||| ||||| | ||||| || ||| |||||| Sbjct 10911357 AATTAATCCTCATGCTATCCCATCGCGTATGACTATTGGTCACTTAATTG 10911406 >seq382 Length=5783 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 180428 GAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGATATTGGTGTT 180487 || || |||||| | || | ||| | |||||| | || |||| | | | | ||| Sbjct 916 GAGTTGTTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTC 975 Query 180488 AAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGA 180547 | | ||| ||| || |||| ||| |||| |||| |||||||| || | || Sbjct 976 CACATATGGGATGCAAACAGTTCACGTGAGTTCCTAGACTCTTGTGGCTTCACAAATAGA 1035 Query 180548 AAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 180592 |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1036 AAAGAAGGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACAT 1080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655234056681000