Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq382 98.7 1e-15 seq741 84.2 3e-11 seq15 84.2 3e-11 >seq382 Length=5783 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 171619 TTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 171678 |||||| |||||| ||| || || || | ||| |||||| | | | | ||| | | Sbjct 922 TTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATA 981 Query 171679 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 171738 ||| ||| || |||| ||||| || |||| | || || || || | ||||||||| Sbjct 982 TGGGATGCAAACAGTTCACGTGAGTTCCTAGACTCTTGTGGCTTCACAAATAGAAAAGAA 1041 Query 171739 GGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 171777 || |||||||| || ||||||||||||||||||||||| Sbjct 1042 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACAT 1080 >seq741 Length=1302912 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 165163 AAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAA 165222 |||||||| |||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 750920 AAAGTTGCACAATTAGCTGGTTCTGTAGCTGAACATTCAGCATATCATCATGGCGAAGTT 750979 Query 165223 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | |||||| || | || ||||| | || ||| |||| || || | ||||||||| Sbjct 750980 TCTCTTATGTCAACC-ATCATTAATCTCGCACAAAATTTCGTAGGAAGTAATAATATAAA 751038 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 ||||| |||| ||||||||||||||| ||| | | ||||| || ||| | ||| Sbjct 751039 TTTACTACAACCAATTGGTCAATTTGGTACGAGACTCGCCGGAGGAAAGGATGCGGCG 751096 >seq15 Length=11467329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGG 193051 ||||| || |||| || ||||||||| ||| || |||| | ||||||| |||||||| Sbjct 10911238 CGTATTCCACAAATTGGTGATAAATTTGCTTCTCGGCATGGAC-AAAAAGGTACTTGTGG 10911296 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 || || ||||||||||||||||||| || | |||| | ||||| ||||| Sbjct 10911297 AATTCAATACAGACAAGAAGATATGCCATTTTCATGTGAAGGTCTCACGCCAGACATTAT 10911356 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 |||||||| || ||| || || | ||||| ||| ||| | |||| Sbjct 10911357 AATTAATCCTCATGCTATCCCATCGCGTATGACTATTGGTCACTTAATTG 10911406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628487132106240