Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq41 109 5e-19 seq172 98.7 1e-15 >seq41 Length=919255 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||| | ||| | ||||| || ||||| ||||| || || ||||| Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | ||||| ||||||||||||||| |||||| | ||| || || ||||| Sbjct 762596 AGTGTACGTCCA-TCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGG 762654 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||||||| ||| | | || | || || | | ||| || Sbjct 762655 GATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAAC 762714 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||| | || || || || | || || ||||| ||||||||| Sbjct 762715 TTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCATA 762763 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137183 GGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGC 137242 |||| ||||| | ||| | || | ||| | || ||||| |||||||| |||||||| Sbjct 762306 GGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAG 762365 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | ||||| | ||||| | |||||||||||| |||||| | || || || |||| Sbjct 762366 AAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAG 762425 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| ||||||| ||| | | || | || || | | ||| | Sbjct 762426 GAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAA 762485 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| ||| | || || || || | |||||||| || |||||||| Sbjct 762486 CTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 762534 >seq172 Length=1724251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 137222 CTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAG 137280 ||||||| || || ||||| || || | || | ||||| | ||| || |||||| | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCA-TCTTCCAATTGCTTTCCAGCAAAA 1092352 Query 137281 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 137340 || |||||||||||||| || || || ||||| ||||| ||||| ||||| | | Sbjct 1092351 ATAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTT 1092292 Query 137341 TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 137400 || | || |||| | ||||||||||| || | || || || ||||| ||||| || Sbjct 1092291 TCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1092232 Query 137401 AATATTTGCAT 137411 ||||| ||||| Sbjct 1092231 AATATCTGCAT 1092221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488509746958800