Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq41 197 3e-45 seq1 161 2e-34 seq172 154 3e-32 seq14 141 2e-28 seq10 118 2e-21 seq9 105 1e-17 >seq41 Length=919255 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| ||| ||||| | || ||||| ||||| || || |||||||||||||| Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| |||||||| ||||||||||| | |||||||| |||||||| Sbjct 762596 AGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGG 762655 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| |||||||| |||||||| || || ||||| ||||| || ||| ||| Sbjct 762656 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACT 762715 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||| || || ||||| | ||||| || || || ||||| Sbjct 762716 TCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 179 bits (198), Expect = 7e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| ||||| || || ||||||||||| || || | | |||||||| ||||| Sbjct 762788 TGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTGC 762847 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| | ||||||||||| || || ||||||||||| |||||||| ||| Sbjct 762848 TTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTTT 762907 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| || || ||||| ||||| || ||| ||||| | || || || || |||||| Sbjct 762908 GCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTC 762967 Query 82788 AACGTCTTTACAAATATCTGCATTATTAT 82816 | ||||| || || |||||||| ||||| Sbjct 762968 AGTGTCTTGACGAAGATCTGCATGATTAT 762996 Score = 178 bits (196), Expect = 3e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| | || |||| | ||| || || | |||| || ||||| || |||||||| | Sbjct 762300 ATCATCGGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGT 762359 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 ||||||| || | | || ||||| | |||||| ||||| ||||| | || ||||| | Sbjct 762360 AATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGT 762419 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 ||||||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||| || Sbjct 762420 CTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAG 762479 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| | |||||| || || ||||| | || |||||||| || |||||| Sbjct 762480 CTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 >seq1 Length=17153651 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 ||||| |||||||| || |||||||| || ||| |||| || |||||||||||||| ||| Sbjct 7345260 GTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCA 7345201 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | | || || |||||||| || || || || ||||| ||||||||||| Sbjct 7345200 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTA 7345141 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||| || || || ||| || ||| ||||| | ||| || || || ||||| || || Sbjct 7345140 ACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTT 7345081 Query 82794 TTTACAAATATCTGCAT 82810 || || || |||||||| Sbjct 7345080 TTAACGAAGATCTGCAT 7345064 Score = 140 bits (154), Expect = 6e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || || || || |||||||| || |||||||| || ||| |||| || |||||| Sbjct 7345500 ACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 7345441 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||| ||||||||||| | | || || |||||||| || || || || || || Sbjct 7345440 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCATGG 7345381 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| ||||| ||||| || || || || | || |||||||| || || | || Sbjct 7345380 ATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGCTTTA 7345321 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || | ||| || ||| | ||||||||| Sbjct 7345320 CCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq172 Length=1724251 Score = 154 bits (170), Expect = 3e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || ||||||||||| || ||| | | || ||||| | ||| ||||||||||| | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | ||| ||||| || || ||||||||||| || || || || ||||||||||||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| ||||| | ||||||||| | || || || || || ||||| || || |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 82801 ATATCTGCAT 82810 |||||||||| Sbjct 1092230 ATATCTGCAT 1092221 >seq14 Length=11649563 Score = 141 bits (156), Expect = 2e-28 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| ||||| || ||||| || | |||||||| ||||| ||||||||||| ||| Sbjct 1883926 CCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAT 1883867 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||||||| || |||| |||||||||||||||||||| ||||||||||||||| || Sbjct 1883866 AAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 1883807 Query 82704 ATTCCT 82709 |||||| Sbjct 1883806 ATTCCT 1883801 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| ||||| ||||| |||||||| |||||||| || ||||| | || || || Sbjct 1883446 CCTTCTTTATCCTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 1883387 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || ||||||||||| || ||||| |||||||||||||| Sbjct 1883386 AGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCAT 1883343 >seq10 Length=13618662 Score = 118 bits (130), Expect = 2e-21 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 198276 AATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCGGAAACACATGAC 198335 || ||| | ||||| ||||| |||||| | | || | ||||| | |||||||||| Sbjct 10007089 AAGGATACAAGAAAATATATATATTCTTTAAGTCAGTTGGAAAACTCTAAAACACATGAT 10007148 Query 198336 CCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTA 198395 | |||||||||||| |||| || ||||||| | ||||||||||||| | || ||| Sbjct 10007149 GATTTATGGAATGCATGTCAAAATCAAATGATAATAACAGGAAAAATGCATGGATTCTTA 10007208 Query 198396 AGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTT-GAG 198454 |||||||| ||||| ||||| || | |||||||| |||||| || ||||| || Sbjct 10007209 AGAATGTATTGGGCAAAAAAATTATTAGAATGGACTGAAACACCTGAGATTGCTTTAGAA 10007268 Query 198455 TTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGT 198514 | || ||| |||| ||||||||| | || || ||||| || || || || Sbjct 10007269 TGGGCCAAT-TATTTAAATAATAAGTACAGTATCGATGGTTGTGATCCGAATGGTTATGT 10007327 Query 198515 AGGT 198518 |||| Sbjct 10007328 AGGT 10007331 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 ||||||| ||||||||||| || || | ||||||| | ||| ||||||| ||||| Sbjct 10007400 TAGGTTGCATGTGGTCTATCTGTGGTGTTCATGATCATGGTTGGCCAGAAAGAGATATAT 10007459 Query 198574 TTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCAT 198633 ||||||| |||||||||||||||||| | || | ||| ||||||| ||||||| | || Sbjct 10007460 TTGGGAAAATAAGATATATGAATTATAATGGATGTAAACGAAAATTTAATGTTGCCGAAT 10007519 Query 198634 TT 198635 || Sbjct 10007520 TT 10007521 Score = 102 bits (112), Expect = 2e-16 Identities = 149/205 (73%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 198024 GATCATAACAATCCTACTTGTTA--TGCCTTGAGTAATTTATCTCCATGGTTACATTTTG 198081 || ||||| |||||| |||| | |||| | ||||||||||| || ||||| ||||||| Sbjct 10006772 GAACATAATAATCCT--TTGTCAAATGCCATCAGTAATTTATCACCTTGGTTTCATTTTG 10006829 Query 198082 GTCATGTATCTCC--ACAACGCGTTGCCTTAGAAGTATTAAAATGTATACGAGAAAACaa 198139 || ||| ||||| |||||| | || ||| || | ||| || | || | || Sbjct 10006830 GT-ATG-ATCTCAGTACAACGTTGTATTTTGGAAATACGAGAATATAAAGGATTGTATAA 10006887 Query 198140 aaaaaaCGTTGAAACGTTTATAGATGAAATAATTATAAGAAGAGAACTGTCGGATAATTT 198199 |||| |||||| | || || || ||| ||||| ||||||||||| |||||||| Sbjct 10006888 AAAATCAGTTGAATCCTTCATGGAGGAAGCTATTATTAGAAGAGAACTTAGTGATAATTT 10006947 Query 198200 TTGTTACTATAATAAACATTACGAT 198224 ||||| ||||||| || | |||||| Sbjct 10006948 TTGTTTCTATAATGAAAAGTACGAT 10006972 >seq9 Length=15655298 Score = 105 bits (116), Expect = 1e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 143968 CTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTTAGGAGA-TGGGCTGATGTT 144026 ||||| || | | | |||||| || || ||||| || || || | | ||||||||| | Sbjct 14509984 CTTGGCAAGATAGAGGCGATCCTGTATTACATATTGATCT-AGTAAAGTGGGCTGATTTA 14510042 Query 144027 TTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGAT 144086 ||| | || || || || || ||||| | | |||||||||| ||| ||||||||| Sbjct 14510043 TTTTTAATCGCTCCACTAGATGCCAATACTCTTGGTAAAATAGCCAGTGGCATATGCGAT 14510102 Query 144087 AATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCC 144146 ||| | |||| | | | | | | ||||||||| | || ||| | |||||||| || Sbjct 14510103 AATATCTTAACTTGTGTCGCACGTGCCTGGGATCCACTGAAGCCTTTGATTTTTTGTCCT 14510162 Query 144147 GCTATGAATACCCTTATGTGGGAACATCCTATTAC 144181 || |||||||| ||||||||||| ||| |||| Sbjct 14510163 GCCATGAATACAAAAATGTGGGAACACCCTGTTAC 14510197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981756640681451