Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq10 109 1e-18 seq9 96.9 6e-15 >seq10 Length=13618662 Score = 109 bits (120), Expect = 1e-18 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 182959 AATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGAC 183018 || ||| | ||||| ||||| |||||| | | || | ||||| | |||||||||| Sbjct 10007089 AAGGATACAAGAAAATATATATATTCTTTAAGTCAGTTGGAAAACTCTAAAACACATGAT 10007148 Query 183019 CCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTA 183078 | |||||||||||| |||| || ||||| | | ||||||||||||| | || ||| Sbjct 10007149 GATTTATGGAATGCATGTCAAAATCAAATGATAATAACAGGAAAAATGCATGGATTCTTA 10007208 Query 183079 CGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTT-GAG 183137 ||||||| ||||| ||||| || | |||||||| ||| || || |||||| || Sbjct 10007209 AGAATGTATTGGGCAAAAAAATTATTAGAATGGACTGAAACACCTGAGATTGCTTTAGAA 10007268 Query 183138 TTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGT 183197 | || ||| | || ||||||||| | || ||| ||||| || || || || Sbjct 10007269 TGGGCCAAT-TATTTAAATAATAAGTACAGTATCGATGGTTGTGATCCGAATGGTTATGT 10007327 Query 183198 AGGT 183201 |||| Sbjct 10007328 AGGT 10007331 Score = 102 bits (112), Expect = 1e-16 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 182707 GATCACAACAATCCTACGTGTGATGCCTTGAGTAATTTATCTCCGTGGTTACATTTTGGA 182766 || || || |||||| || ||||| | ||||||||||| || ||||| |||||||| Sbjct 10006772 GAACATAATAATCCTTTGTCAAATGCCATCAGTAATTTATCACCTTGGTTTCATTTTGG- 10006830 Query 182767 CATGTATCTC--CACAACGTGTTGCTTTAGAAGTATTAAAATGTATACGAGAAAACaaaa 182824 ||| ||||| ||||||| | ||| ||| || | ||| || | || | |||| Sbjct 10006831 TATG-ATCTCAGTACAACGTTGTATTTTGGAAATACGAGAATATAAAGGATTGTATAAAA 10006889 Query 182825 aaaaCGTTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTT 182884 || |||||| | || || || ||| ||| | ||||||||||| |||||||||| Sbjct 10006890 AATCAGTTGAATCCTTCATGGAGGAAGCTATTATTAGAAGAGAACTTAGTGATAATTTTT 10006949 Query 182885 GTTACTATAATAAACATTACGATAGTGTTCAGTCTACTCACGCATGGGCTAGAAGAACAT 182944 ||| ||||||| || | |||||| |||| | | | | | ||||||| || |||| Sbjct 10006950 GTTTCTATAATGAAAAGTACGATCTTGTTGAAGGTGCCTATCCTTGGGCTATAAAAACAC 10007009 Query 182945 TA 182946 || Sbjct 10007010 TA 10007011 >seq9 Length=15655298 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 142987 CTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAGGAGA-TGGGCGGATGTT 143045 ||||| || | | | |||||| || || ||||| || || || | | ||||| ||| | Sbjct 14509984 CTTGGCAAGATAGAGGCGATCCTGTATTACATATTGATCT-AGTAAAGTGGGCTGATTTA 14510042 Query 143046 TTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGAT 143105 ||| | || || || || || ||||| | | |||||||||| || ||||||||| Sbjct 14510043 TTTTTAATCGCTCCACTAGATGCCAATACTCTTGGTAAAATAGCCAGTGGCATATGCGAT 14510102 Query 143106 AATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCC 143165 ||| | |||| | | | | | | ||||||||| | || ||| | ||||||||||| Sbjct 14510103 AATATCTTAACTTGTGTCGCACGTGCCTGGGATCCACTGAAGCCTTTGATTTTTTGTCCT 14510162 Query 143166 GCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 || ||||||| ||||||||||| ||| |||| Sbjct 14510163 GCCATGAATACAAAAATGTGGGAACACCCTGTTAC 14510197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903347859582240