Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 1e-13 seq6 91.5 3e-13 >seq12 Length=12868931 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| |||||||| |||| || || ||| |||||||| ||||| || ||||| || Sbjct 8704712 TTCAATCGGCAACCAACACTACACAAGATGAGTATGATGGGTCATAGGGTAAAAGTGTTG 8704653 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGT-GCTTGTACGCCTTATAATGCGGATTTTG 305453 | |||| | ||||| || | ||| | ||| || || | ||||||||||| ||||||| Sbjct 8704652 CCATGGAGT-ACATTCCGTATGAATCTTAGTTGCACGT-CTCCTTATAATGCCGATTTTG 8704595 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 | || || || |||||| | || || || || |||| || Sbjct 8704594 ACGGCGACGAGATGAATTTACACGTTCCGCAGTCAATGG 8704556 >seq6 Length=12724418 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 |||||| | |||||| | || ||||| ||||| | ||||| | ||| | || |||||| Sbjct 10925062 GAAGAAAATAGAGCAAGAGAATTATTCTATGCTTTATGGATACCTGATCTTTTTATGAAA 10925121 Query 110889 CGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 || ||| || ||||| | |||||| | |||||||| ||| |||||||||||| || Sbjct 10925122 CGAGTTTTGGATAATGGTGTATGGTCTTTAATGTGTCCACATGAATCTCCTGGTCTACCT 10925181 Query 110949 GATGTATATGGAAAAGAGTTTGA 110971 ||||| | || | || ||||| Sbjct 10925182 GATGTTTGGGGCGATGAATTTGA 10925204 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111054 TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 || ||||||||||| ||||||||||| || | |||||||||||| |||||| ||||| Sbjct 10925380 TCTCAAGTTGAAACAGGAACTCCTTACATGCTTTATAAAGATCATTGTAATCGTAAATCA 10925439 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| |||||||| || || || |||||||| || Sbjct 10925440 AATCATCAAAATTTAGGGACGATCAAAAGCAGTAATTTATG 10925480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186727509327249