Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-21 seq41 109 4e-19 >seq1 Length=17153651 Score = 116 bits (128), Expect = 2e-21 Identities = 147/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || ||||| ||||| || || || | | | || || | |||||| || ||||| Sbjct 7345255 CTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAA 7345196 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||| ||| | || | ||| |||||||| || || || || ||||| Sbjct 7345195 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTT-TGCTTTAACAT 7345137 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||| | ||| || |||| || || ||||| |||||||| ||||| | Sbjct 7345136 TCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAA 7345077 Query 33737 CAAAGATCTGCATAGTTG 33754 | ||||||||||| |||| Sbjct 7345076 CGAAGATCTGCAT-GTTG 7345060 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||| ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 7345503 AACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 7345444 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| |||||||||||||| ||| | || | ||| ||||| || Sbjct 7345443 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCA 7345384 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || |||| |||| || | |||||| || || || | || || | Sbjct 7345383 TGGATCTTAGCTTTC-ACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGC 7345325 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || | |||||| ||| |||||||||| Sbjct 7345324 TTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 >seq41 Length=919255 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 33511 ATAAAATCGTCA-CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTAT 33569 || ||||| || ||||||| | ||| | ||| | ||| | || || |||||||| Sbjct 762295 ATTAAATCATCGGCCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTAT 762354 Query 33570 GTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTG 33629 |||||||| || |||||||| | || ||||||||||| || || || ||||| | ||| Sbjct 762355 ATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTG 762414 Query 33630 CTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGT 33688 || ||| | || | ||||| ||||| |||||| || || |||| || | || | Sbjct 762415 TTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTT-TGCTTTCACATTCTCAATAGTAT 762473 Query 33689 CGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 | | ||| || |||| || || ||||| ||||| | ||||||||||| || |||| Sbjct 762474 CAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCA 762533 Query 33749 T 33749 | Sbjct 762534 T 762534 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| || ||||| || || ||||||||||| || ||| |||| || | ||| Sbjct 762787 ATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTG 762846 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||||| ||||| ||||| | || ||||| |||| | ||||| ||||| |||||| Sbjct 762847 CTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTT 762906 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || || || | || | || ||| | ||| || |||| ||||| ||||| |||| Sbjct 762907 -TGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTG 762965 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || || ||||||||||| Sbjct 762966 TCAGTGTCTTGACGAAGATCTGCAT 762990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328681529897280