Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq41 109 1e-18 seq1 109 1e-18 seq172 84.2 5e-11 >seq41 Length=919255 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||||||||| ||||| | ||||| ||| ||| || Sbjct 762987 CAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCGAT 762928 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || | | ||||||||| |||||||| || ||||||||| |||||| || Sbjct 762927 ACTATTGAGAACGTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATTCCGCCGGATCAACA 762869 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||| || |||||||| | ||||| ||| | || | ||||||| || | Sbjct 762868 AAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAATAT 762809 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || |||||||| ||||| Sbjct 762808 TCAAAAGGAATCGACTCTTCATCTTGT 762782 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| || ||| | ||||| ||| |||||| || | || Sbjct 762519 AAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCTGATACTATTGAGAAT 762460 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| || ||||||||| || ||| || || | ||||| Sbjct 762459 GTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAGAGGTTGATCTT 762401 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || ||||||||||| | || | | |||||||| | || || || || Sbjct 762400 CGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAATATACAAAAGGAATC 762341 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || | || ||||| | | |||||| Sbjct 762340 AACCTTGCATCTTGTGCTTCGTCTTCGA 762313 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||| ||||| || ||| | ||||| ||| ||| || || | || Sbjct 762748 CAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCCGATACTATTGAGAA 762689 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||||||| |||||||| || |||||||| || ||| ||||| | |||| Sbjct 762688 CGTGAAAGCAAAA-ATTCAAGACAAGGAAGGAATCCCTCCAGACCAACAAAGGTTGATCT 762630 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || || || ||||||||||| | || | | ||||| || | || || || | Sbjct 762629 TTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAATATTCAAAAGGAAT 762570 Query 206363 CTACTCTTCACCTTGTT 206379 | |||||||| |||||| Sbjct 762569 CGACTCTTCATCTTGTT 762553 >seq1 Length=17153651 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||| ||||| || ||| | ||||| ||| |||||||||| | || Sbjct 7345079 AAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCTGACACAATAGAGAAT 7345138 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||| ||||| ||||| || ||| || ||| || | | ||||| Sbjct 7345139 GTTAAAGCAAA-GATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAGCGTTTGATCTT 7345197 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || | ||||||||||| ||| | | ||||| ||| ||||||||||||| Sbjct 7345198 TGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTATAACATCCAGAAAGAGTC 7345257 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || | || ||||||||||| Sbjct 7345258 TACAAGCCATTTAGTGTTGAGACTTCG 7345284 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || ||| | || || |||||||| || | | |||||| | || Sbjct 7345307 AAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCCCGACACAATAGAGAAT 7345366 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || |||||||| || ||| || ||| || | | ||||| Sbjct 7345367 GTGAAAGCTAA-GATCCATGAAAAAGAGGGTATTCCTCCAGACCAGCAGCGTTTGATCTT 7345425 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || | ||||||||||| ||| | | ||||| ||| ||||||||||||| Sbjct 7345426 TGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATCCAGAAAGAGTC 7345485 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||||||||||| Sbjct 7345486 CACACTCCATTTAGTGTTGAGACTTCG 7345512 >seq172 Length=1724251 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || || ||||| ||||| | ||||| ||| || || Sbjct 1092224 CAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCAGAT 1092283 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| || || || || ||||||||| || || || Sbjct 1092284 ACTATTGAAAATGTAAAAGCTAAA-ATCCAGGACAAGGAAGGAATTCCACCTGATCAGCA 1092342 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || |||||||| |||||||||||| | ||| || | ||||| || | Sbjct 1092343 ACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAATAT 1092402 Query 206352 CCAGAAAG 206359 || |||| Sbjct 1092403 TCAAAAAG 1092410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181735868078889