Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 4e-16 seq6 95.1 4e-16 seq1 95.1 4e-16 seq791 86.0 2e-13 >seq7 Length=18145390 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 11461134 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 11461193 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 11461194 CCGGGTTTCGGC 11461205 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||| ||||||||||||||||||||| || ||||| ||||||| | Sbjct 11460978 GCCGAAATAGCTCAGTTGGAAGAGCATTAGACTGAAGATCTGAATGTCCCCGGTTCAATC 11461037 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 11461038 CCGGGTTTCGGC 11461049 >seq6 Length=12724418 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 4274353 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 4274294 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4274293 CCGGGTTTCGGC 4274282 >seq1 Length=17153651 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 10197349 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 10197290 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10197289 CCGGGTTTCGGC 10197278 >seq791 Length=429353 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||| | ||||| ||||| | | Sbjct 138065 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAGATGTCCCCGGTTCGATC 138124 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 138125 CCGGGTTTCGGC 138136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848627651805