Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq41 100 3e-16 seq6 96.9 3e-15 seq172 87.8 2e-12 >seq1 Length=17153651 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | || || ||||| ||||| || ||| | || || | ||||| ||||| Sbjct 7345060 CAACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGC 7345119 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || || ||| | || ||| ||| || || ||||||||||| || || || Sbjct 7345120 TTCTGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGA 7345179 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| | | || | | ||||||||||| ||||||| |||| | | ||||| Sbjct 7345180 CCAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTA 7345239 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || ||||| || || | ||||||||||| ||| | | ||||||| Sbjct 7345240 TAACATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACTTCGCGGAGGAA 7345292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | | ||| ||||| | || || ||| | || || | ||||| || | | Sbjct 7345292 ATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCCC 7345351 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| || || || ||||||||||| || || || ||| Sbjct 7345352 GACACAATAGAGAATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCAG 7345411 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||||||||| ||||||| |||| | | ||||| || Sbjct 7345412 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7345471 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| ||||| | ||||||||||| ||| | | ||||||| Sbjct 7345472 ATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGACTTCGTGGAGGAA 7345520 >seq41 Length=919255 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || ||| | || |||||| | ||||| | ||||| ||||| Sbjct 762991 CATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTC 762932 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| ||| | || ||| ||||||| || || || || || ||||| ||||| Sbjct 762931 CGATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCA 762872 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||| | || | | || || ||||| ||||| | | | || |||||| || Sbjct 762871 ACAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAA 762812 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 ||||||||| ||||| || ||||| Sbjct 762811 TATTCAAAAGGAATCGACTCTTCAT 762787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | ||||| ||||| | Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| ||||||| || || || || || || || || || Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | || | | || |||||||| ||||||| | | || ||||| ||| Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAAT 762583 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| ||||| || ||||| | || | | |||||||||||| Sbjct 762582 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGAA 762534 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || |||||| | || || | ||||| ||||| Sbjct 762534 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCT 762475 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| ||||||| || || || || || || || || || Sbjct 762474 GATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 762415 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || || |||||| | ||||||| | | | ||||||||| Sbjct 762414 CAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAAT 762355 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| ||||| ||| | ||| | ||| Sbjct 762354 ATACAAAAGGAATCAACCTTGCATCTTGTG 762325 >seq6 Length=12724418 Score = 96.9 bits (106), Expect = 3e-15 Identities = 223/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 137389 ATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTT 137448 ||||| ||||| || ||||||||||||||| ||| || | || |||||| | || Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 137449 GCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCG 137508 | || |||||| | | | ||| |||||| | | | | ||||| || ||| Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 10925586 Query 137509 AAATCGAAGCTTTTAG-ACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTT 137567 ||||| || | | | |||| ||| |||| |||| || || || || ||||| || Sbjct 10925585 AAATCAAATGTCTGATTACTGGAGTTTA-CAAACATATTCACTGCGATTGAAGCTAAATT 10925527 Query 137568 GCATACGGCCGTTTCTGTATTGTC-GCTGTATTGTACAATTTCGGCGCAAAGATTGCTGT 137626 |||||| || |||| | | | | | |||||||| ||||| | || | ||| ||| Sbjct 10925526 GCATACAGCAATTTCA-TCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTGC 10925468 Query 137627 TTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACG-TGATCTTTATATATC 137685 || |||| || ||||| | ||||| ||| || | || ||||||||||| | | Sbjct 10925467 TTTTGATCGTCCCTAAATTTTGATGATTTGATTTA-CGATTACAATGATCTTTATAAAGC 10925409 Query 137686 ATATACGGAGTTCCGGTTTCGACTTGAG 137713 || || |||||||| ||||| ||||||| Sbjct 10925408 ATGTAAGGAGTTCCTGTTTCAACTTGAG 10925381 >seq172 Length=1724251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||| ||||| || || || ||| | ||||| | ||||| ||||| Sbjct 1092217 CAAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGC 1092276 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||| || | |||||| ||||| || || || || || || || || Sbjct 1092277 ATCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGA 1092336 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGAT 25348 ||||||| | || |||| | || || ||| | ||||||| | | | ||||| || Sbjct 1092337 TCAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAG--AT 1092394 Query 25349 TACAATATTCAAAAAG 25364 || ||||||||||||| Sbjct 1092395 TATAATATTCAAAAAG 1092410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445063193318880