Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq172 95.1 1e-14 seq1 89.7 5e-13 seq41 82.4 7e-11 >seq172 Length=1724251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||| || ||||| | || || || | || |||| ||||| || ||||| || Sbjct 1092408 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1092349 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGC 35667 | || ||||| || | |||| | ||||||||| ||| ||| |||| | | || | Sbjct 1092348 AGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGAT-TTTAGCTTTTACATTTTC 1092290 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | || || | ||| || || | ||||| |||||||| ||||||||||||||||| Sbjct 1092289 AATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAA 1092230 Query 35728 TATCTGCAT 35736 ||||||||| Sbjct 1092229 TATCTGCAT 1092221 >seq1 Length=17153651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | |||||||| ||||| ||| ||| || || ||||| ||||| | Sbjct 7345292 TTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCG 7345233 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || || || ||||| ||||| ||||||||||| | || Sbjct 7345232 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7345173 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| ||||| ||||||| || | | | | | ||||| | ||| | Sbjct 7345172 GAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAA 7345113 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || ||||| || || || ||||| || || |||||||| Sbjct 7345112 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCAT 7345064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||||||| ||||| | || ||| || || ||||| ||||| | Sbjct 7345520 TTCCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7345461 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || || || ||||| ||||| ||||||||||| | || Sbjct 7345460 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7345401 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| || || |||||| |||| | | | | |||||| || | Sbjct 7345400 GAATACCCTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAA 7345341 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| || || | |||||| || | ||||| ||| | |||||||||| Sbjct 7345340 CTTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATTC 7345290 >seq41 Length=919255 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| || ||||||| | || || |||| || || ||||| || ||||| Sbjct 762800 TCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAG 762859 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||||| || || |||| |||| | ||||||| | ||| |||||| |||| | Sbjct 762860 ATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTT 762918 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | ||| || || | ||||| ||||| || |||| || || || Sbjct 762919 CTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGAC 762978 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 762979 GAAGATCTGCAT 762990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450761993733720