Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq41 111 2e-19 seq172 86.0 6e-12 >seq1 Length=17153651 Score = 125 bits (138), Expect = 7e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || || |||||||| ||||| |||||||||||||| || || || || || ||||| Sbjct 7345218 TCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTG 7345159 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || ||| ||| || || | |||||| || | ||| || || |||||||| Sbjct 7345158 TCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATA 7345099 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 7345098 GTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTG 7345060 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | |||| |||||| | || || ||||| || || || ||||| || || Sbjct 7345520 TTCCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7345461 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || || || || |||||||| ||||| |||||||||||||| || || | Sbjct 7345460 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7345401 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || |||||||| || || || ||| || || | |||||||| || | Sbjct 7345400 GAATACCCTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAA 7345341 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||||||| |||||| || | |||||||| | || |||||| Sbjct 7345340 CTTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq41 Length=919255 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || || || || || |||||||||||||| || || || Sbjct 762534 TTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAG 762593 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || || ||||| || ||||| ||||| | || || || || | Sbjct 762594 AGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAG 762653 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||||||| ||| || || | || ||||| | ||| | Sbjct 762654 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAA 762713 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| || ||||| || || | || || |||||||||||||| Sbjct 762714 CTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | ||| || || | || ||||||||||| || ||||| || | Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||||| || || || ||||| | ||| || || || || Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||||||| ||| || || | || || || | ||| || Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| || || | ||||| || |||||||||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || |||||||||||||| || || ||| | || | ||| || Sbjct 762782 ACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCA 762841 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || ||||| ||||| | || ||||| ||||| || ||||| || |||||| Sbjct 762842 AGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGA 762901 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 |||||| ||| || || | || ||||| | ||| || || || || || ||||| Sbjct 762902 ATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTT 762961 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 762962 CCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 >seq172 Length=1724251 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || || || |||||||| | ||| |||||||| || || || ||||| || || || ||| Sbjct 1092366 TGCTTTCCAGCAAAAATAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATT 1092307 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||| || || | || || || | ||| || || || || ||||||||||| Sbjct 1092306 TTAGCTTTTACATTTTCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCA 1092247 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || |||||||| || || || ||||| ||| Sbjct 1092246 GTCAAAGTTTTCACAAATATCTGCATCTTG 1092217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505362965254680