Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 178 2e-39 seq15 122 1e-22 >seq6 Length=12724418 Score = 178 bits (196), Expect = 2e-39 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 68643 TATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAG 68702 ||||||| ||| || || | |||| ||| | | ||| || || | | ||| | | Sbjct 10926364 TATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGTAATAA 10926305 Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| || | |||||| || ||||| || ||||| | | |||||||||||||| Sbjct 10926304 ATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTACTGGT 10926245 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||||||||| | ||||||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 10926244 ATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGACGCCGTTGGCATAGG 10926185 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCA 68882 || | |||||| ||| |||| |||||| | ||||| ||||| ||| | |||| Sbjct 10926184 GGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAATTGTCCA 10926125 Query 68883 ATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 | ||| | ||||| ||| ||||||||| | || ||||||| ||| Sbjct 10926124 GTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 10926077 Score = 174 bits (192), Expect = 2e-38 Identities = 221/304 (73%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 |||| ||||||||||| | ||| || | ||||| | |||||||||||||| |||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | |||| |||| |||||||||||| ||||| | |||| || || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 |||| ||||| ||||| | |||||||||| |||| ||| |||| || | |||| Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTC 10924779 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 |||| |||||| | | | || || || || || || ||| || || |||| Sbjct 10924778 TTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTGCAC 10924719 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | | ||| ||||| ||||| || || |||||||||||||| |||| | || | ||||| Sbjct 10924718 ATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAAAC 10924659 Query 69968 AGCT 69971 | || Sbjct 10924658 AACT 10924655 Score = 134 bits (148), Expect = 2e-26 Identities = 131/165 (79%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||||||| |||||||||||| | |||||| |||||| ||||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || ||| ||| |||| ||||||||||||||| ||||| || ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGT--AttttttttA 69678 | ||||| | |||||||||||| || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 120 bits (132), Expect = 4e-22 Identities = 234/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 69115 ATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTA 69174 ||||| ||||| |||||| | |||||| ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 69175 ATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA 69234 | ||| |||||||| | | ||| | || | ||| || | ||||| | Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 10925586 Query 69235 AAATCAAATCGTCCATCTA-------TAACAAACATATTCAGTGCTACAGATGCTAGATT 69287 ||||||||| ||| || | ||||||||||||| ||| | || |||| ||| Sbjct 10925585 AAATCAAAT-GTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAATT 10925527 Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347 || || || | |||| | | | | |||||||| || |||||||||| |||||| | Sbjct 10925526 GCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTGCT 10925467 Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407 |||||| ||||| | |||||| ||||| || ||||| || || ||||| || Sbjct 10925466 TTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGCAT 10925407 Query 69408 AAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 | ||||| || ||||||| ||||| | ||||| | |||| Sbjct 10925406 GTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 10925362 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | |||| || | |||| |||||||| || |||||||||||||| || Sbjct 10925951 ATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAGCTAGCCTCTAATGCACCATA 10925892 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | ||| || || || | |||| || | ||||||||| ||| || |||||||| Sbjct 10925891 ATATAGTGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAATGGATA 10925832 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | || ||||||||||| | ||||||| ||||| || Sbjct 10925831 TCGCATTAAAAGGAATGCATCTGCAAGACCCTGAATTCCAATCCC 10925787 Score = 89.7 bits (98), Expect = 7e-13 Identities = 181/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||||||||||| || || |||| | ||| ||| | || |||||||| || || || Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 | ||| || | | |||||| ||||| |||||| || ||||| ||| ||| || Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCAC-CATGGAT 10924465 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 | | || || | ||| ||||| || || |||| ||| || ||| | |||||| Sbjct 10924464 GGCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTATTTT 10924405 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 || | || | |||| || || || || ||||| || || || ||||||||| || Sbjct 10924404 TAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCTATC 10924345 Query 70209 GTAAATAATAACAGAATTTAGTTTAT 70234 ||||| || ||||||||| |||| Sbjct 10924344 ATAAATTATCGCAGAATTTAACTTAT 10924319 >seq15 Length=11467329 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39876 TATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCG 39935 ||||| | | ||||||||| || |||| | ||||||||||| || | ||||| || | Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 39936 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTT 39995 | | ||||| || || ||||| | ||| || || | |||||| ||| || ||||| || Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055 | | | || ||||| || ||||||||| ||| ||||| ||||| || ||||| | Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 40056 TAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGA 40107 | |||| ||| ||||| | || | |||||||||| ||||| | ||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGA 5182098 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| | | |||||||||| || |||||||| ||||||||||| || ||| ||| Sbjct 5183073 TTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATA 5183014 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | | ||| ||||||||||| | || ||| |||| ||| ||||||| ||| |||| ||| Sbjct 5183013 AGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGTTCA 5182954 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || ||| | || || || || || || | |||| || | | | Sbjct 5182953 ATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACAATA 5182894 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || ||||| |||||||||| |||| Sbjct 5182893 TGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Score = 100 bits (110), Expect = 4e-16 Identities = 157/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | || ||| |||||| ||||| ||||||| ||| | |||| Sbjct 5182661 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 5182602 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || ||||||||| || |||||| || ||||| ||||| ||||||| Sbjct 5182601 TCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 5182542 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA------TCATTATGTATCCACTTCTGTGCCCAAT 39812 |||| | | | || | || |||| |||| || ||||| || ||||||| Sbjct 5182541 CAACCA--CACGTTCAGGAA-ATGTAGCACTCTCATGATTGATCCAATTTAACGCCCAAT 5182485 Query 39813 CAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||||| ||| || || || | |||| || ||||| || Sbjct 5182484 TAGCTTTTTTCGCAACGCATGGTAAATTTTCAATCGCATTGAA 5182442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686860639106760