Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq12 120 2e-22 seq15 107 2e-18 >seq16 Length=5274633 Score = 123 bits (136), Expect = 2e-23 Identities = 214/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| | | || | ||| |||||| ||| || ||| || || || || Sbjct 2699248 CCAGATTGGGACTTTCAAAAAATGGGAATTGGTGGACTGGATAATGAATTCAGTGCTATT 2699307 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 || || |||||||| | ||| || |||||| | |||| | ||| ||| |||| ||| Sbjct 2699308 TTCCGAAGAGCATTCGCGTCACGAGTTTTTCCGCCAGAAATTGTTACTCAACTGGGTTGT 2699367 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 || ||||| || |||| |||||||| ||||| ||| || ||||| ||||| || Sbjct 2699368 AAGCATGTAAAAGGGATTTTACTTTATGGTCCACCAGGTACCGGTAAAACGTTAATGGCA 2699427 Query 19396 AG--AGA-ACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || ||| | | || ||| | | | | |||| |||||| || ||||| ||| || Sbjct 2699428 AGGCAGATAGGAACTATGTTAAATGCTAGAGAACC---CAAAATCGTCAATGGCCCTCAA 2699484 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| || || |||| ||||| |||| || |||||||| ||| Sbjct 2699485 ATTTTGGATAAATATGTTGGAGAAAGTGAAGCTAATGTTAGACGATTATTTGCTGATGCT 2699544 Query 19513 GAAGAAGA 19520 |||||||| Sbjct 2699545 GAAGAAGA 2699552 >seq12 Length=12868931 Score = 120 bits (132), Expect = 2e-22 Identities = 212/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| | | || | ||| |||||| || || |||||| || || || Sbjct 8113796 CCAGATTGGGACTTCCAAAAAATGGGAATTGGTGGTTTAGATAAAGAATTCAGTGCTATT 8113855 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 ||||| || ||||||| || || |||||| | |||| | ||| |||||||| ||| Sbjct 8113856 TTTCGGAGGGCATTTGCATCACGAGTTTTTCCACCAGAAATTGTTACTCAATTGGGTTGT 8113915 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||| |||| |||||||| ||||| ||| || ||||| ||||| || Sbjct 8113916 AAACATGTGAAAGGAATTTTACTTTATGGCCCACCAGGTACAGGTAAAACGTTAATGGCA 8113975 Query 19396 AGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || | | || ||| | | | | ||||| ||||| || ||||| ||| | Sbjct 8113976 CGGCAAATAGGGACTATGTTAAATGCTAGAGAACCT---AAAATCGTCAATGGCCCTCAG 8114032 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| || || |||| ||| | |||| || |||||||| ||| Sbjct 8114033 ATTTTGGATAAATATGTTGGAGAAAGTGAAGCTAATATTAGACGATTATTTGCTGATGCT 8114092 Query 19513 GAAGAAGA 19520 ||||| || Sbjct 8114093 GAAGAGGA 8114100 >seq15 Length=11467329 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||||||| |||||| || || || || ||||| || || || || || ||| Sbjct 5182137 GAGAAACATTTCATATCTCATGTCTTAGCATTCTTTGCGGCTTCTGATGGAATCGTTAAT 5182196 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || || | || || ||| |||||||| ||| || | || ||||| ||||| ||| Sbjct 5182197 GAGAACCTCGTCGAACGATTTAGTCAAGAAGTACAAGTAACCGAGGCACGTTGTTTCTAT 5182256 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||| | |||||||||||| | || || ||||||||| | | |||| ||||| Sbjct 5182257 GGTTTTCAAGTCGCCATAGAAAATGTGCACTCAGAAATGTACTCTATGTTGATTGATACA 5182316 Query 44009 TACATCAAAGAT 44020 || |||| |||| Sbjct 5182317 TATATCACAGAT 5182328 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| ||| ||||| || ||||| || |||| | |||||| ||| Sbjct 5181914 TTACTGAAAGAAAATCCACGTAGATTTGTTGTCTTTCCTATCCAATGGCCTGACATTTGG 5181973 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 |||||||| |||||||| | || ||||||||||| | || ||||| ||| | ||||| Sbjct 5181974 CAAATGTATAAAAAAGCTGAAGCATCATTTTGGACTGTCGAGGAAGTGGATCTTTCTAAA 5182033 Query 43796 G 43796 | Sbjct 5182034 G 5182034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428830032045