Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq1 91.5 1e-13 seq41 89.7 4e-13 seq172 82.4 6e-11 >seq6 Length=12724418 Score = 104 bits (114), Expect = 2e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 131225 TCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAA 131284 || || ||||||| |||||| | ||||||| ||| || || || ||| || ||| Sbjct 10925642 TCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCAAAA 10925583 Query 131285 TCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAA 131344 ||||| || | | | ||||||||| ||| || ||||| || | ||| || Sbjct 10925582 TCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAATTGCAT 10925523 Query 131345 ACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTT 131404 || || |||| || | | |||| || || ||||| | || ||||||||||| || Sbjct 10925522 ACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTGCTTTTG 10925463 Query 131405 ATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAG 131464 || || || |||||||| ||||| |||| ||| ||| || || || | |||||| Sbjct 10925462 ATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGCATGTAA 10925403 Query 131465 GGCGTGCCCGTTTCGACTTGAG 131486 || || || ||||| ||||||| Sbjct 10925402 GGAGTTCCTGTTTCAACTTGAG 10925381 >seq1 Length=17153651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | | ||| || ||||| ||||| ||||| || || || || || Sbjct 7345290 CCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAA 7345231 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| || ||||| || || | || | |||||| || || || || Sbjct 7345230 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345171 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || |||||| ||| | | |||| ||||| | ||||||||| Sbjct 7345170 ATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACT 7345111 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTA 27255 || ||||| |||| ||| || || | ||||| || ||||| ||||| | ||||| Sbjct 7345110 TCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCAT-GTTGCTA 7345057 >seq41 Length=919255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || ||||| |||||||| || | ||||| | ||||| | || Sbjct 762331 ATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTG 762390 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| | || | | |||||| || || || | || || || || || || Sbjct 762391 TTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTT 762450 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | || | ||| || | ||||||||||| |||||||| | ||| || || Sbjct 762451 TGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGT 762510 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||| |||||||| Sbjct 762511 AAGGGTTTTTACAAAAATTTGCAT 762534 >seq172 Length=1724251 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 ||||||||||||| || || || | || | ||||| | || || || || ||| Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | ||||| || ||||| || || | || || || || ||| || ||| | ||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||| |||| ||||| ||||| || || || | ||| || |||| ||||||||||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 1092230 ATATCTGCAT 1092221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424905351617208