Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq382 95.1 9e-15 >seq382 Length=5783 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 112067 TTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTAT 112126 |||| ||||| ||||||||||| |||||||||| ||| || | |||||| | ||| Sbjct 1090 TTGCACCATAATGTCTCCATTGAAATCCATAAACAGGTCCTAAATCTCCTTCTTTTCTAT 1031 Query 112127 CTGGAAATTGCTCTCTATTCAACAAA-TCACTTCTAATATGAGGATTCCAAATCTTCAC- 112184 || || | | | || | || |||| | | | | | || ||| || | || Sbjct 1030 TTGTGAAGC-CACAAGAGTCTAGGAACTCACGTGAACTGTTTGCATCCCATATGTGGACA 972 Query 112185 TCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTC 112244 |||||| || ||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct 971 TCCTTTTGACT-TAATTCTTTGGCATTTGTCGATCCTCTAATAAACCATAACAACTCCTC 913 Query 112245 CACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 ||| || || |||| | |||| || |||||||||| ||| || Sbjct 912 CACTACGCCCCTCCAAAATACTCGCTTTGTAGTTAGCAATGGGAA 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391918806721267