Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq9 140 4e-28 seq5 86.0 8e-12 >seq9 Length=15655298 Score = 140 bits (154), Expect = 4e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 89198 CGATCCTGTCTTGCATATAGAACTTAGGAGGTGGGCTGATATATTTATTATCGCGCCACT 89257 ||||||||| || ||||| || || | |||||||||| ||||| | ||||| ||||| Sbjct 14510000 CGATCCTGTATTACATATTGATCTAGTAAAGTGGGCTGATTTATTTTTAATCGCTCCACT 14510059 Query 89258 AACGGCTAATACTCTAGCGAAGATAGCTAATGGTATATGCGACAACTTACTAACTTCTAT 89317 | || |||||||| | || ||||| | ||| |||||||| || | |||||| | | Sbjct 14510060 AGATGCCAATACTCTTGGTAAAATAGCCAGTGGCATATGCGATAATATCTTAACTTGTGT 14510119 Query 89318 AGTTAGGGCATGGGATATATCAAAGCCCCTTATTTTTTGTCCTGCCATGAATACTCTAAT 89377 | | || |||||| | ||||| | ||||||||||||||||||||||| ||| Sbjct 14510120 CGCACGTGCCTGGGATCCACTGAAGCCTTTGATTTTTTGTCCTGCCATGAATACAAAAAT 14510179 Query 89378 GTGGGAACATCCTATTACTGAATCACA 89404 ||||||||| ||| |||||| | |||| Sbjct 14510180 GTGGGAACACCCTGTTACTGCACCACA 14510206 >seq5 Length=11918102 Score = 86.0 bits (94), Expect = 8e-12 Identities = 180/264 (68%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 46890 TGTATATTTGTTAATGTCGCGTCTAAATGCCGTTTAGCAGATAGTAATTATAAGGAACTA 46949 |||||| |||||||||| || || || | || ||||||| ||||||| |||||| Sbjct 6393854 TGTATAATTGTTAATGTTGCTAGCAACTGTGGATTTACAGATAGACATTATAAAGAACTA 6393913 Query 46950 GTTGAGTTACACAACAAATATTAT----TGCAATGGTTTGCGTATAATGGCTTTTCCATG 47005 || | || | | || ||| | || || ||||| | || | || || |||| Sbjct 6393914 GTACAATTGTATGAAAAGTATAGTGAGGTGGAA-GGTTTAAGGATTCTAGCATTCCCATC 6393972 Query 47006 TAACCAGTTTGGTAACCAAGAACCAGGTAATGCGATAGAAATAATGAATACCATGAAAAA 47065 || || |||||| |||||||||||| || | | |||||| | ||| | ||||| Sbjct 6393973 AAATCAATTTGGTGGCCAAGAACCAGGCGATTCCACAGAAATCTTAAATTTTGTCAAAAA 6394032 Query 47066 ATAT-TCTATATTTTTTAACGTATCTGAAAAAATACTGGTTAATAGTATTTATGCGCATC 47124 |||| | || |||| | | | | | ||||||| |||||| | | ||||||||| Sbjct 6394033 ATATAACGTTACTTTTGATC-TGTTTCAAAAAATTGATGTTAATGGAGATAATGCGCATC 6394091 Query 47125 CTTTGTGGAAATGGTTACAGACAC 47148 | || ||||||||||| ||| || Sbjct 6394092 CATTATGGAAATGGTTGAAGAAAC 6394115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603138509486160