Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 136 2e-27 seq41 123 2e-23 seq172 107 1e-18 >seq1 Length=17153651 Score = 136 bits (150), Expect = 2e-27 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| |||||| || ||| || || ||||||||||| ||| Sbjct 7345290 CCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAA 7345231 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| || ||||| || |||||||| ||||| || || Sbjct 7345230 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345171 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| |||||| |||| |||| |||||| | |||||||| ||| || | Sbjct 7345170 ATACCCTCTTTGTCTTGGATC-TTTGCTTTAACATTCTCTATTGTGTCAGAAGCT-TCAA 7345113 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||| | || || ||||| || ||||| ||||| || || |||||||||||| Sbjct 7345112 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTG 7345060 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| |||||||| ||| ||| || || ||||||||||||||| Sbjct 7345518 CCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 7345459 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| || ||||| || |||||||| ||||| || || Sbjct 7345458 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345399 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| || || |||| || | ||| || | |||||||| || || Sbjct 7345398 ATACCCTCTTTTTCATGGATC-TTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAAC 7345340 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || | |||||| || | |||||| ||| | |||||||| Sbjct 7345339 TTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 47174 TTAGCGGACGCGGGCTTCTTTTATACTGGTGAAGGTGATAAAACGAAGTGTTATTATTGT 47233 ||||| || || ||||| ||||||||||| ||||||| |||| ||||||| | ||| Sbjct 4469299 TTAGCCGATGCAGGCTTTTTTTATACTGGGAAAGGTGACCAAACCTTGTGTTATCACTGT 4469358 Query 47234 GATGGTGGTCTGAGAGATTGGAACGAAGAAGATATACCTTGGGAGGAGCACGC 47286 | |||||| ||| ||||||| | ||||||| ||||||||| | || || Sbjct 4469359 GGAGGTGGTTTGAAAGATTGGGAACCAGAAGATGATCCTTGGGAGCAACATGC 4469411 >seq41 Length=919255 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | ||| ||||| ||||||||||| |||||||| || Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| ||||||||||| ||||| || || | |||||||| || || Sbjct 762596 AGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGG 762655 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||| ||||||||| ||| ||||| ||| ||| | ||| || || ||| || | Sbjct 762656 ATTCCTTCCTTGTCT-TGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCT-TCAA 762713 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||||| ||||| || || | || || || ||||| ||||| Sbjct 762714 CTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 113 bits (124), Expect = 3e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| ||||| ||||||||||| |||||||| || Sbjct 762764 CCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAG 762823 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||||||||| || || ||||| || || | ||||| |||||||| Sbjct 762824 AGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGA 762883 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||| ||||||||| ||| ||||| ||| ||| | ||| || || ||| || | Sbjct 762884 ATTCCTTCCTTGTCT-TGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCT-TCAA 762941 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || ||||| || || | || || || || ||||||||| Sbjct 762942 CTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATG 762991 >seq172 Length=1724251 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 |||||||| ||||||||||| || || || | ||||| | ||| || || ||||| || Sbjct 1092408 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1092349 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA 34638 | ||| || || || || || | ||| |||||||| ||| || ||||| | | Sbjct 1092348 AGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTTCA 1092289 Query 34639 ATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || ||| ||| || ||||| | ||| || |||||||| || || ||||||||||| Sbjct 1092288 ATAGTATCTGATGCT-TCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAA 1092230 Query 34698 AATCTGCATGTTG 34710 |||||||| ||| Sbjct 1092229 TATCTGCATCTTG 1092217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708085182897