Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq41 154 1e-32 seq1 125 6e-24 seq172 109 5e-19 seq11 93.3 4e-14 >seq41 Length=919255 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || || | || ||||||||||| ||| | || Sbjct 762534 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCT 762475 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||||||| ||||| || || || || ||| Sbjct 762474 GATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 762415 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || |||||||||||||| | || |||| |||||||| Sbjct 762414 CAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAAT 762355 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||| || ||||| ||| | || | ||| | || |||||| Sbjct 762354 ATACAAAAGGAATCAACCTTGCATCTTGTGCTTCGTCTTCGAGGTGGC 762307 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| || || |||| || |||||||| ||| | || Sbjct 762991 CATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTC 762932 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || ||| ||||||||||||||| ||||| || || || ||||| Sbjct 762931 CGATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCA 762872 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || ||| | |||||| | || | |||||||| || Sbjct 762871 ACAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAA 762812 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | ||| | || | || | || ||||| || Sbjct 762811 TATTCAAAAGGAATCGACTCTTCATCTTGTCCTTCGCCTTCGTGGTGGTAT 762761 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || || |||| ||||||||||| ||| | ||| Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||||||| ||||| || || || || ||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || |||||| ||||||| | || | || ||||| || Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAAT 762583 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 ||||||||||| ||||| | ||| | ||| | ||| || | || || || ||| | | Sbjct 762582 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGAAT-GCAA--ATT 762526 Query 27228 TTTGTAA 27234 ||||||| Sbjct 762525 TTTGTAA 762519 >seq1 Length=17153651 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| | || || || |||||||||||||||| ||| | || Sbjct 7345063 CATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTC 7345122 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || ||| ||| || ||||||||||| || || || || || || Sbjct 7345123 TGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7345182 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || ||||||||| | ||||| | || |||| ||||| || Sbjct 7345183 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTATAA 7345242 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| || || ||||| || ||||| || ||| Sbjct 7345243 CATCCAGAAAGAGTCTACAAGCCATTTAGTGTTG 7345276 >seq172 Length=1724251 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||| |||| || || | || || |||||||| ||| | || Sbjct 1092221 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1092280 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 1092281 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1092340 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||||||||| | || | || ||||| || Sbjct 1092341 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1092400 Query 27168 ATTCAAAA 27175 |||||||| Sbjct 1092401 ATTCAAAA 1092408 >seq11 Length=17228712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 49818 ATACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGC 49877 ||||| || |||||||||||||||||||| | ||||| || || || | |||||| || Sbjct 15303297 ATACGAGCCGGGTAAAAGACATTGGTTGAAGGTAAAAAAGGATTATTTATACGATGGTGC 15303238 Query 49878 CATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGG 49937 ||||||||||| | ||| | || || | || ||||||||||| | ||||| || || Sbjct 15303237 GATGGCCGATAGTGCAGATCTCGTTGTGCTTGGCGCATGGTACGGCACGGGAAACAAAGG 15303178 Query 49938 T 49938 | Sbjct 15303177 T 15303177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434887906783680