Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq172 86.0 4e-12 seq41 82.4 5e-11 >seq172 Length=1724251 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 || ||||| || |||||||||||| | ||||| ||| || || |||| || ||| | Sbjct 1092218 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1092277 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 1092278 TCAGATACTATTGAAAAT--GTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTG 1092335 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | |||||||| ||||| |||||||| || | ||| | |||| |||| Sbjct 1092336 ATCAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATT 1092395 Query 27965 ACAACATCCAAAAAG 27979 | || || ||||||| Sbjct 1092396 ATAATATTCAAAAAG 1092410 >seq41 Length=919255 Score = 82.4 bits (90), Expect = 5e-11 Identities = 167/245 (68%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| ||||| || ||| || || |||| || ||| | Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| |||||| ||||| ||||| |||| || Sbjct 762475 TGATACTATTGAGAAT--GTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGAC 762418 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || |||| || || || || ||||||||||| || | |||| | || |||||| Sbjct 762417 CAACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTAC 762358 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG-CGACGATTG 28025 || || ||||| || || |||||| | || | ||| | || || || ||| |||| Sbjct 762357 AATATACAAAAGGAATCAACCTTGCATCTTGTGCTTCGTCTTCGAGGTGGCCGATGATTT 762298 Query 28026 GATAT 28030 |||| Sbjct 762297 AATAT 762293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355838073357543