Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq41 158 3e-33 seq1 149 1e-30 seq172 136 9e-27 >seq41 Length=919255 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| |||||||| || || ||||| || |||||||| | || || Sbjct 762769 ACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGT 762828 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||| || ||||| || || ||||| | | |||||| || || |||| ||| Sbjct 762829 ACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCC 762888 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || ||| ||||||||| || || || || || |||||| || || Sbjct 762889 TTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAG 762948 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || ||||| || || | |||||| Sbjct 762949 TGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||| || || ||||| || |||||||| | || || | ||||||| Sbjct 762551 AGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCT 762610 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || || || || ||||| | | ||||||||| ||||| | |||||||||||| Sbjct 762611 TCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCT 762670 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||||||||| || || || || || |||||| || ||||| || || Sbjct 762671 TGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTT 762730 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 762731 TTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||||| || | || || || ||||| || || ||||| | ||| || Sbjct 762314 CGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTG 762373 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| || || || |||||||| | | |||||||| ||||||| |||| Sbjct 762374 CGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCT 762433 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || ||| |||||| || || || || ||||| |||||| || ||| Sbjct 762434 TCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGA 762493 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || || || |||||||| | |||||| Sbjct 762494 GTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 >seq1 Length=17153651 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || |||||||| |||||||||||||||| ||| || ||||||||||| || || ||||| Sbjct 7345260 GTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCA 7345201 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || ||||| ||||||| || || ||||| ||||||||| ||| Sbjct 7345200 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTA 7345141 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || |||||||| |||||| || ||||| || || || || || | || Sbjct 7345140 ACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTT 7345081 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||| || Sbjct 7345080 TTAACGAAGATCTGCATGTT 7345061 Score = 132 bits (146), Expect = 1e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| | || | || || ||||||||||| |||||||||||||| | ||| Sbjct 7345516 TCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAG 7345457 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| || || ||||| || ||||| | || || ||||| ||||||| Sbjct 7345456 AGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAAT 7345397 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || || || |||||||| |||||| || || || ||||| | ||||| || Sbjct 7345396 ACCCTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTC 7345337 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | || || | || || || || || || ||| | | ||||||| Sbjct 7345336 CAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq172 Length=1724251 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || |||||||| | || || | ||||||||||| ||||| || || || | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 |||| ||||| || ||||| |||| |||||||||||||||||| || ||| || |||| Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || || || ||| || || || ||||| || || || || | ||| || |||| Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 211105 ACACCTGCATTTT 211117 | | |||||| || Sbjct 1092230 ATATCTGCATCTT 1092218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159068697179285