Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=17153651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||| ||||| || ||| |||||| || || |||||||| | ||| |||| | | || Sbjct 7345503 AACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 7345444 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || || |||||||| ||||| || | |||||||||||| | || | | |||||| || Sbjct 7345443 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCA 7345384 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || ||| | || | | || ||| || || |||| || || | Sbjct 7345383 TGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGCT 7345324 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||||||| |||| ||||| Sbjct 7345323 TTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || |||||||| | ||| |||| | | || || || |||||||| ||||| Sbjct 7345255 CTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAA 7345196 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | |||||||||||| | || | | ||||||||| ||| || ||| | | Sbjct 7345195 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATT 7345136 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || | || || || | || ||| |||| || || | |||||||| Sbjct 7345135 CTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAAC 7345076 Query 39273 AAAGATTTGCATCTT 39287 ||||| ||||| || Sbjct 7345075 GAAGATCTGCATGTT 7345061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429516236397017