Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 150 1e-31 seq41 118 7e-22 >seq1 Length=17153651 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||||||| | || || ||||| || ||||| |||||||| | Sbjct 7345061 AACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 7345120 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| ||||| | ||| || |||||||| ||| | || ||||| Sbjct 7345121 TCTGACACAATAGAGAATGTTAAAGC-AAAGATCCAAGACAAAGAGGGTATTCCTCCAGA 7345179 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || ||||| ||||||||||| ||||| | | | ||| | ||||| Sbjct 7345180 CCAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTA 7345239 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || |||||||| ||| |||||||| || || | || |||||| Sbjct 7345240 TAACATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACTTCGCGGAGGA 7345291 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| | |||||||| || || || ||| | || || | |||||||| | Sbjct 7345291 AATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCC 7345350 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | ||| | || | | ||| ||||| ||| | || ||||| | Sbjct 7345351 CGACACAATAGAGAATGTGAAAGCTAAGA-TCCATGAAAAAGAGGGTATTCCTCCAGACC 7345409 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| ||||||||||| ||||| | | | ||| | ||||| | Sbjct 7345410 AGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATA 7345469 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || |||||||||||| | |||||||| || || | || |||||| Sbjct 7345470 ACATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGACTTCGTGGAGGA 7345519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 32891 CCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACACACAAC 32950 |||||| || || || | |||||||||||||||||| || | |||| | |||||| Sbjct 4469400 CCAAGGATCATCTTCTGGTTCCCAATCTTTCAAACCACCTCCACAGTGATAACACAAGGT 4469341 Query 32951 TTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTTCTGTTG 33010 || ||| ||| | || |||||||||| || || || ||||||||| | | ||| | Sbjct 4469340 TTGGTCACCTTTCCCAGTATAAAAAAAGCCTGCATCGGCTAATTGTTCTTTTGTTTGTGG 4469281 Query 33011 CAAAGATTTTGGCCA 33025 || |||||| ||||| Sbjct 4469280 CATAGATTTAGGCCA 4469266 >seq41 Length=919255 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || || ||||| || ||||| |||||||| | | Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| ||||||| ||||| ||||| | || ||||| ||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || |||||||||||||| | ||| || | ||||| || Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAAT 762583 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||| | ||| | | || |||||||| Sbjct 762582 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGA 762535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986493769372