Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq41 129 1e-24 seq1 125 2e-23 seq172 122 2e-22 seq7 122 2e-22 seq5 105 2e-17 seq3 96.9 8e-15 >seq41 Length=919255 Score = 129 bits (142), Expect = 1e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||| || ||||| ||||| ||||| | ||| ||||||| | || Sbjct 762769 ACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGT 762828 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| ||||| ||||| | | |||||| || |||||||| || Sbjct 762829 ACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCC 762888 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||| || |||||| ||||| || || || || || | ||| || || | Sbjct 762889 TTCCTTGTCTTGAAT-TTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAA 762947 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || |||| || || | ||| | ||||| Sbjct 762948 GTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 Score = 120 bits (132), Expect = 7e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| || | || ||||| ||||| | ||||||||| | | || Sbjct 762314 CGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTG 762373 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| | || || ||||||||||| | | |||||||| || ||||| ||| Sbjct 762374 CGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCT 762433 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| || |||||| |||||| || || || || || | ||| || || | Sbjct 762434 TCCTTGTCTTGAAT-TTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAG 762492 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | ||||||| || | ||||||| Sbjct 762493 AGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 107 bits (118), Expect = 5e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| ||||| ||||| | ||| ||||| | | || | |||||| Sbjct 762551 AGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCT 762610 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| | | ||||||||| || || || |||||||||||| Sbjct 762611 TCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCT 762670 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || |||||| ||||| || || || || || | ||| || || | || || || Sbjct 762671 TGAAT-TTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGT 762729 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 762730 TTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 >seq1 Length=17153651 Score = 125 bits (138), Expect = 2e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | ||| || || ||||| |||| || ||||| | | |||| Sbjct 7345284 CGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTT 7345225 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||||||||| || || ||||| ||||| | || || ||||| || |||||||| Sbjct 7345224 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7345165 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||||||||||||| || ||| || || ||||| || | ||| || || | Sbjct 7345164 TCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGA 7345105 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || || || ||||| | ||| | ||||| || Sbjct 7345104 GTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTT 7345061 Score = 113 bits (124), Expect = 1e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | ||||| ||||| ||||| |||| || ||||| | | ||| Sbjct 7345513 ACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGT 7345454 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||||||||| || || ||||| ||||| | || || ||||| || |||||||| Sbjct 7345453 TCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACC 7345394 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || |||||||| |||||| || || ||||| Sbjct 7345393 CTCTTTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTC 7345352 Score = 111 bits (122), Expect = 4e-19 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||| Sbjct 14534962 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAAGAATTGGATCTCCTCCTCCTAT 14535021 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 ||||||||||| |||||||||||||| |||| Sbjct 14535022 AGGATCAAAAAATGAAGTATTAAAATTTCGATCA 14535055 >seq172 Length=1724251 Score = 122 bits (134), Expect = 2e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | ||| ||||| | || ||| | |||||||| | ||||| ||||| || | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC-ACAGCT 225642 |||| ||||| || || || ||||| ||||||||||| ||||| ||| |||| ||| | Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGAT-TTTAGCTTTTACATTT 1092292 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || || || ||||| | ||| || || | ||||| || || || ||||||||||| | Sbjct 1092291 TCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1092232 Query 225703 AACACTTGCATTTT 225716 || | ||||| || Sbjct 1092231 AATATCTGCATCTT 1092218 >seq7 Length=18145390 Score = 122 bits (134), Expect = 2e-22 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || || |||||||| ||||||||||| || ||||||||||| ||||| || Sbjct 9057247 GAAAATTTGTCCGTCGGTAATAGAAATAACATTTGTGGGAATATAAGCAGACACATCGCC 9057188 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 |||||||| |||| |||||| || ||||||| ||| ||||| || ||| ||| ||| Sbjct 9057187 AGCTTGTGTCTCGATAACAGGCAAAGCTGTTAATGAACCACCTCCCAAACTTTCATT 9057131 >seq5 Length=11918102 Score = 105 bits (116), Expect = 2e-17 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||| ||||||||||||||||| |||||||| ||| | | Sbjct 8372683 ATACTTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCACCTTCTC 8372624 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 || ||||||||||| ||||||| ||||| |||| Sbjct 8372623 CTATAGGATCAAAAAAAGGTGTATTAATATTTCGATCA 8372586 >seq3 Length=14656165 Score = 96.9 bits (106), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||||||| |||||||| ||||||||||||||| | |||| ||| ||||| | Sbjct 6865814 ATACTTCTGGATGACCGAAAAATCAAAATAAATGTTGATAAGGAATAGAATCACCTCCTC 6865873 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 || || |||||||| |||||||||||| | |||| Sbjct 6865874 CTATAGGGTCAAAAAATGAAGTATTAAAATTACGATCA 6865911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192445498372646