Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 185 1e-41 seq15 120 4e-22 >seq6 Length=12724418 Score = 185 bits (204), Expect = 1e-41 Identities = 222/302 (74%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 |||||| || || ||||||| ||| || |||| |||| ||| | | || || || Sbjct 10926378 GAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTC 10926319 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 | | ||| | | ||||||||| || | |||||| ||||||||||| ||||| | | Sbjct 10926318 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 10926259 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||||||||||||||||||||| | ||||||||| ||||| || ||||| |||||||| Sbjct 10926258 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAC 10926199 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || ||||||||||| || | |||||| ||| || | |||||| | ||||| ||| Sbjct 10926198 GCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCT 10926139 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || ||| | |||| | ||| | ||| | || ||||| ||| | || ||||||| | Sbjct 10926138 TTCAGAATTGTCCAGTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTAAA 10926079 Query 77337 AT 77338 || Sbjct 10926078 AT 10926077 Score = 143 bits (158), Expect = 4e-29 Identities = 217/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||||||||||||||| | ||| || | ||||| | |||||||||||||| |||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | |||| |||| |||||| ||||| ||||| | ||||| || || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 |||| | ||||||||| | ||| |||||| ||| ||| |||| || | || | Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTC 10924779 Query 78256 TTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 |||| |||||| |||| | || || || || || || || || || Sbjct 10924778 TTGCTCGAATA----CAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGT 10924723 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | ||| |||||||| || || || ||||| || ||||| |||| | || | | Sbjct 10924722 GCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAA 10924663 Query 78372 AAACAGCT 78379 ||||| || Sbjct 10924662 AAACAACT 10924655 Score = 136 bits (150), Expect = 5e-27 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||||||||| |||||||||||| | ||||| |||||| ||| ||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || |||||| ||| ||||||||||||||| |||||||||||||||| |||| ||| Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAGAAT 10925085 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGT--ATTCTTTTTA 78086 | |||| | ||||| |||||| || ||||| ||| || ||| Sbjct 10925084 AATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 118 bits (130), Expect = 1e-21 Identities = 265/394 (67%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 ||||| ||||| |||||| | ||| || |||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGA 77642 | || |||||||| | | ||| | | ||| | ||| || | ||||| | Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 10925586 Query 77643 AAATCAAATCTTCCAT--CT----ATAACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 ||||||||| | || || | |||||||| |||| || || || |||| ||| Sbjct 10925585 AAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAATTG 10925526 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 || || || | |||| | ||| |||||||| || || ||||||| |||||| | | Sbjct 10925525 CATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTGCTT 10925466 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAAT 77815 ||||| || || | |||||| || || || ||| | |||| || |||||||| || Sbjct 10925465 TTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGA-TCTTTATAAAGCAT 10925407 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | ||||| || ||||||| || || | ||||| | |||| | |||| |||| Sbjct 10925406 GTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTCGCTTG 10925347 Query 77876 TATCATAGATTTGTATCGCCTCTCTCTTTCATAT 77909 ||| | ||| |||| |||| | |||||| Sbjct 10925346 AATCTGACGTTTATATCTTTTCTCAGTCTCATAT 10925313 Score = 100 bits (110), Expect = 4e-16 Identities = 184/269 (68%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||||||| || || ||| | ||| ||| | || ||||||||||| ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----CCATTGATG 78493 | ||| || | | |||||| ||||| |||||| || || || |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 | || || || | ||| ||||| || || ||||||||||| || | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 ||| || || || | |||| | || || |||||||| || || || ||||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTAT 78642 || ||||| || ||||||||| |||| Sbjct 10924347 ATCATAAATTATCGCAGAATTTAACTTAT 10924319 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| ||| |||||||| || || |||||||||| || ||||||||||||| | Sbjct 10924126 CACTAAAACTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 10924067 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 | |||||||| ||||||| ||||| ||| || || |||| || || | | | |||| Sbjct 10924066 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCGGCAGTTTCAGCTGCAAGATTGTCTA 10924007 Query 78862 ACTCTATAGTTGTGACCCCATTATATA 78888 | || | ||| || || || ||||| Sbjct 10924006 ATTCAACAGTGGTTACACCTGAATATA 10923980 >seq15 Length=11467329 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 ||| ||| |||| | | |||||||||| || | |||||| ||||| ||||| |||||| Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||| | | ||| ||||||||||| | || ||| |||| ||| ||||| | ||| Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA 48116 |||||||| || |||||||||| || || || || ||| || | ||| Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903 Query 48117 TACAACAAATGTTTAAACATTAAACATGCAAAATCACAATG 48157 | | | |||||| |||||||||||||| ||||||||||| Sbjct 5182902 TGTACAATATGTTTGAACATTAAACATGCGAAATCACAATG 5182862 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | ||| ||||| || | |||||||||||||| || |||||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| || ||| ||||||| || || | |||||||||| |||||||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTT 5181924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694620095033760