Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 178 2e-39 seq15 125 1e-23 >seq6 Length=12724418 Score = 178 bits (196), Expect = 2e-39 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAG 75705 ||||||| ||| || || | |||| ||| | | ||| || || | | ||| | | Sbjct 10926364 TATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGTAATAA 10926305 Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| || | |||||| ||||||||||| ||||||| | |||||||||||||| Sbjct 10926304 ATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTACTGGT 10926245 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | ||||||||| ||||| || ||||| ||||| || || || |||||||| Sbjct 10926244 ATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGACGCCGTTGGCATAGG 10926185 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | |||||| ||| || | |||||| | ||||| ||||| ||| | |||| Sbjct 10926184 GGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAATTGTCCA 10926125 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 | ||| | ||| | ||| ||||| ||| | || ||||||| ||| Sbjct 10926124 GTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 10926077 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 |||||||||||||||||| || || | ||||| | |||||||||||||| |||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | | || |||| |||||| ||||| ||||| | ||||| || || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCAC 76850 |||| | ||||||||| | || |||||| |||| ||| |||| || | || | Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTC 10924779 Query 76851 ATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||| |||||| | | | || || || || || || ||| || || |||| Sbjct 10924778 TTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTGCAC 10924719 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | ||| ||||| ||||| || || ||||| |||||||| |||| | || | ||||| Sbjct 10924718 ATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAAAC 10924659 Query 76971 AGCT 76974 | || Sbjct 10924658 AACT 10924655 Score = 136 bits (150), Expect = 6e-27 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||||||| |||||||||||| | ||||||| |||||| |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || |||||| ||| ||| ||||||||||| |||||||||||||||| |||| ||| Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAGAAT 10925085 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGT--ATTCTTTTTA 76681 | |||| | |||| |||||| || ||||| ||| || ||| Sbjct 10925084 AATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 105 bits (116), Expect = 1e-17 Identities = 262/394 (66%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 76118 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTA 76177 ||||| ||||| |||||| | ||| || ||| ||||| |||| || |||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 76178 ATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGA 76237 | ||| |||||||| | | ||| | ||| | ||| || | ||||| | Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 10925586 Query 76238 AAATCAAATTTTCCAT--CTA----TCACAAACATATTAAGAGCTATAGATGCTAGATTA 76291 ||||||||| | || || | ||||||||||| | || || || |||| ||| Sbjct 10925585 AAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAATTG 10925526 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 || || || | |||| | | ||| |||||||| || || || |||| |||||| | Sbjct 10925525 CATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTGCTT 10925466 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAAC 76410 ||||| || || | |||||| || || || |||| |||| || |||||||| | Sbjct 10925465 TTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGA-TCTTTATAAAGCAT 10925407 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 | |||||||| ||||||| || || | ||||| | |||| | |||| |||| Sbjct 10925406 GTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTCGCTTG 10925347 Query 76471 TATTATAGATTTGTATCGCTTCTCTCTTTCATAT 76504 || | ||| |||| ||||| | |||||| Sbjct 10925346 AATCTGACGTTTATATCTTTTCTCAGTCTCATAT 10925313 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | || | |||| ||||| || || |||||||| ||||| || Sbjct 10925951 ATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAGCTAGCCTCTAATGCACCATA 10925892 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | ||| || || || | ||||||| | ||| ||||| ||| ||||| ||||| Sbjct 10925891 ATATAGTGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAATGGATA 10925832 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | || ||||||||||| || ||||||| |||||| || Sbjct 10925831 TCGCATTAAAAGGAATGCATCTGCAAGACCCTGAATTCCAATCCC 10925787 >seq15 Length=11467329 Score = 125 bits (138), Expect = 1e-23 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 46889 TATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAG 46948 ||||| | | ||||||||| || || | | ||||||||||| || | ||||| || | Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 46949 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTT 47008 | | ||||| || || ||||| | ||| || || | ||||| ||| || |||||||| Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 47009 CAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTA 47067 | ||| | |||||||| || ||||||||| ||| ||||| ||||| || ||||| Sbjct 5182209 C-GACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGAT 5182151 Query 47068 ATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 47120 || |||| ||| ||||| || | | | |||||||||| ||||| | ||| Sbjct 5182150 ATGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGA 5182098 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485 ||| ||| |||| | | |||||||||| || | |||||| ||||| ||||| ||||| Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023 Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545 ||| | | ||| ||||||||||| | || || |||| ||| ||||| | ||| Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||||||| |||||||||| || || || || || || | ||| Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || | | |||||| |||||||||||||| ||||||||||| Sbjct 5182902 TGTACAATATGTTTGAACATTAAACATGCGAAATCACAATG 5182862 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| ||||| || | ||||| ||||| || || |||||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233 ||| || ||| | ||||||| ||||| | |||||||||| |||||||| | |||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTTCTTTCAGTA 5181915 Query 47234 TAGGTTC 47240 ||||| Sbjct 5181914 ATGGTTC 5181908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712884414386880