Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq41 141 2e-28 seq1 140 7e-28 seq172 86.0 1e-11 >seq41 Length=919255 Score = 141 bits (156), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||||||||| || || ||||| || || ||||||| | || | || ||| Sbjct 762779 AGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCT 762838 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| | ||| || || |||| || ||||||||||| | Sbjct 762839 TCAAGTTGCTTT--CCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGT 762896 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||||||| ||| || |||| | | || ||| || |||||||| || |||| Sbjct 762897 CTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAG 762956 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || ||||| ||||||| |||||| Sbjct 762957 TTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| || || ||||| || || ||||| | | || | |||||| Sbjct 762551 AGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCT 762610 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | ||| || ||||| | | |||||||||||| ||| Sbjct 762611 TCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCT 762670 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| || |||| | | || ||| || ||||||||||| |||||| Sbjct 762671 TGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTT 762730 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| | ||||| Sbjct 762731 TTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| | || || || ||||| || |||||||| | | || | ||||||| Sbjct 762323 AGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCT 762382 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || |||||||| | |||||| ||||| | | ||||||||||| ||| Sbjct 762383 TCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCT 762442 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| |||| | | || ||| || ||||||||||| || ||| Sbjct 762443 TGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTT 762502 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || || | |||||| Sbjct 762503 TTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 >seq1 Length=17153651 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||||||||| |||||||| ||||| | | |||||| ||||||||||| ||| || Sbjct 7345260 GTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCA 7345201 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | ||||||||| | | || || || || ||||| || ||| ||| Sbjct 7345200 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTA 7345141 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||||| |||| ||| || |||||||||||||||||||| || || | || Sbjct 7345140 ACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTT 7345081 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||||| |||||| || Sbjct 7345080 TTAACGAAGATCTGCATGTT 7345061 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| |||||||| ||||| | | |||||| Sbjct 7345509 AGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTT 7345450 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || || || Sbjct 7345449 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7345390 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 ||||| || || || ||| ||| |||||| |||| | | || ||||| | ||| Sbjct 7345389 TTTTCATGGATCTTAGCTTTCACATTCTCTATTGTGTCGGGAACATCAACTTCCAAGGTA 7345330 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || | ||| || || || || || || ||| ||||||| Sbjct 7345329 ATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCATT 7345291 >seq172 Length=1724251 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 ||||||| || || ||||| | | ||| | |||||||| | ||||| || || || Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTT--CCAGCAAA 1092353 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||||| | ||||| || | | ||||||||||| || || ||||| ||| ||| | Sbjct 1092352 AATAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATT 1092293 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | ||||| ||||||||||| || || ||||| || || | ||| ||||| Sbjct 1092292 TTCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCAC 1092233 Query 152093 GAAGACCTGCATTTT 152107 || | |||||| || Sbjct 1092232 AAATATCTGCATCTT 1092218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153737880307639