Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq172 100 2e-16 seq41 100 2e-16 seq14 87.8 2e-12 >seq172 Length=1724251 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || ||||| ||||| ||||| || |||||||| ||| | ||| ||| | Sbjct 1092218 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1092277 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| || ||| | |||||| ||||| ||||| ||||| |||| ||| Sbjct 1092278 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGAT 1092337 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||| | ||||||| ||| || || |||||||||||| ||| || | |||||| Sbjct 1092338 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1092397 Query 111277 AATATACAAAAAG 111289 ||||| ||||||| Sbjct 1092398 AATATTCAAAAAG 1092410 >seq41 Length=919255 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| | || || ||||| || || | ||| ||| | Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || ||| | || ||| ||||||| ||||| ||||| |||| || || Sbjct 762475 TGATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 762416 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276 ||| ||| | || | || || ||||||||||||||| | | ||| | | ||||| Sbjct 762415 ACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTT--CTGATTAC 762358 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||||||||| ||||| || | ||| | ||| | ||||| || |||||| Sbjct 762357 AATATACAAAAGGAATCAACCTTGCATCTTGTGCTTCGTCTTCGAGGTGGC 762307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || | || || ||||| || || | ||| ||| | | Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| ||||| ||||| | || || ||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 |||||| | || | ||| || |||||| |||||||| | | ||| | | ||||||| Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCT--CTGATTATA 762585 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||| ||||| || || ||| | || | |||||| | || || Sbjct 762584 ATATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGG 762536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || |||| || ||||| || || | ||| ||| | | Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| ||||| ||||| |||| |||||| Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAA 762871 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | || | ||| || || ||| | ||||| || | ||||||||||| Sbjct 762870 CAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAAT 762811 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || ||| | || | || || || ||||| Sbjct 762810 ATTCAAAAGGAATCGACTCTTCATCTTGTCCTTCGCCTTCGTGGTGG 762764 >seq14 Length=11649563 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 ||||||||||| | || | ||| || |||||||| || ||| || |||| | | ||| Sbjct 1883814 GATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGAT 1883873 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| || || ||||||||| ||||||||||| | ||| | | ||||| Sbjct 1883874 TATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAGAGGTGG 1883926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421782365118184