Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 179 8e-40 seq41 178 3e-39 seq172 141 2e-28 seq3430 95.1 3e-14 seq14 93.3 9e-14 seq16 89.7 1e-12 seq17 86.0 1e-11 seq9 86.0 1e-11 seq8 86.0 1e-11 seq4 84.2 5e-11 >seq1 Length=17153651 Score = 179 bits (198), Expect = 8e-40 Identities = 156/194 (80%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||| || || | ||| || | ||||| ||||||||||| || |||||| Sbjct 7345254 TCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAG 7345195 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || ||||| ||||||||||| |||||||||||||||||||| || | Sbjct 7345194 ATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTC 7345135 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| |||||||| ||||| ||||| || || || || || || || |||||| Sbjct 7345134 TCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACG 7345075 Query 283089 AATATCTGCATTTT 283102 || |||||||| || Sbjct 7345074 AAGATCTGCATGTT 7345061 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||| || || | ||| || | ||||| ||||||||||| || |||||| Sbjct 7345482 TCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAG 7345423 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || ||||| ||||||||||| || || |||||||| ||||| || | Sbjct 7345422 ATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTTTCATGGATCTTAGCTTTCACATTC 7345363 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| | | | || ||||| | || || | ||||| || | || ||||| Sbjct 7345362 TCTATTGTGTCGGGAACATCAACTTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACA 7345303 Query 283089 AATATCTGCATT 283100 | ||||||||| Sbjct 7345302 GAGATCTGCATT 7345291 >seq41 Length=919255 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || ||||| | || ||| ||||| || || || || | Sbjct 762763 ACCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGA 762822 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| || || || || ||||| || || ||||||||||| | |||||| || ||| Sbjct 762823 GAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGG 762882 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| || |||||||| ||| | || ||||| || |||||||| || Sbjct 762883 AATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAAC 762942 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| || || || |||| ||||| ||||| |||||||| Sbjct 762943 TTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| || ||||| || || ||| ||||| || ||||| |||| | Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || | |||||| || || |||||||| | |||||||| ||| Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| || |||||||| || | || ||||| || |||||||| ||| Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || || || || | || || || || || |||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| ||||| || ||||| | || ||| ||||| || || || |||| Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || |||||||| || ||||||||||| | ||||||||| || Sbjct 762596 AGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGGG 762655 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| || |||||||| ||| | || ||||| || |||||||| ||| Sbjct 762656 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACT 762715 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || || | ||||| ||||| || ||||| Sbjct 762716 TCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 >seq172 Length=1724251 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 ||||||| || || || || | || || || ||||| || | ||| || || ||||| | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1092351 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | |||||| || ||| ||||| || |||||||| ||||| || |||||||| | | Sbjct 1092350 TAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTT 1092291 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | ||||| || || ||||| ||||| || ||||| || ||||| |||||||| || || | Sbjct 1092290 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1092231 Query 283090 ATATCTGCATTTT 283102 |||||||||| || Sbjct 1092230 ATATCTGCATCTT 1092218 >seq3430 Length=546 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||| |||||||||||||| ||||| || | || || || || |||||||| ||||| Sbjct 546 ACCCTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTATCAGAAGCTTCTACTTC 487 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATA 283106 ||||| || || || || || || || ||||| || |||||||| || ||| Sbjct 486 AAGAGTAATAGTTTTTCCTGTTAATGTTTTAACAAAGATCTGCATGTTGATA 435 >seq14 Length=11649563 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| || || || || || |||||||| || | |||||||| || || || ||||| | Sbjct 1883448 TACCTTCTTTATCCTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCT 1883389 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| ||||| || || |||||||| || ||||||||||| Sbjct 1883388 CAAGAGTGATAGTCTTGCCTGTTAAAGTCTTCACAAATATCTGCAT 1883343 >seq16 Length=5274633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3133459 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3133515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3134745 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3134801 >seq17 Length=3558169 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 775393 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 775337 >seq9 Length=15655298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 8164537 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 8164593 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||| |||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8161192 TTAGTACAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8161250 >seq8 Length=9733834 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 5715208 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 5715152 >seq4 Length=14241696 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||| |||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4776250 TTAGTACAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4776308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046663975760286