Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq15 107 2e-18 >seq15 Length=11467329 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||| ||| | |||||| |||||| | |||||||||||| |||| |||||| Sbjct 5182659 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTTTC 5182600 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || || |||||||| ||| |||||||||||| || || || ||||| || Sbjct 5182599 AGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATGCA 5182540 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 || | |||| | |||||| ||| | | || | ||||| ||| | ||||||||| Sbjct 5182539 ACCACACGTTCAGGAAATGTAGCACTCTCATGATTGATCCAATTTAACGCCCAATTAGCT 5182480 Query 23713 TT 23714 || Sbjct 5182479 TT 5182478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23771 TATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAG 23830 ||||||| |||||||||||||| | | | |||||||| || || | |||||| || | Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 23831 CAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 | | ||||| ||||| ||||| | || || | | ||| || || | | ||||| || Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 23891 TAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTA 23950 | | || || ||||| || |||||| ||| |||||||| || | |||| || Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 23951 TAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGA 24002 | |||||| | |||||| | ||| | ||||| ||| ||||| | ||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGA 5182098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521451437172600