Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq41 105 5e-18 seq1 105 5e-18 >seq41 Length=919255 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||||||| | | || || ||||| || |||||||| || || || Sbjct 762529 TTGCATTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATA 762588 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| || | || ||||| || || || ||||||||||| | || || || Sbjct 762589 ATCAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTC 762648 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||||| | | | | || ||||| | |||| | || || |||| | Sbjct 762649 TGGAGGGATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAG 762707 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || || || || |||||||| ||||| |||||||| Sbjct 762708 CTTCAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || |||||||| || || ||||||| ||| || |||| || Sbjct 762782 ACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCA 762841 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||||||||| | || ||||| | || | |||||||| | | | Sbjct 762842 AGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGT-CTTG 762900 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || ||||| | |||| | || || |||| | ||| || || | || || || || Sbjct 762901 AATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTT 762960 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||| || || ||||| |||||||| |||||||| Sbjct 762961 TCCTGTCAGTGTCTTGACGAAGATCTGCATGAT 762993 >seq1 Length=17153651 Score = 105 bits (116), Expect = 5e-18 Identities = 169/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||||||||||| | || || ||| || |||||||| ||||| Sbjct 7345294 CATTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATC 7345235 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || || || || |||||||||||||||||||| ||| Sbjct 7345234 CGAAAGAGTT--CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCT 7345177 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | ||| || || || ||||| ||||| || ||| |||| ||||| | | Sbjct 7345176 GGAGGAATACCCTCTTTGTCTTGGATCTT-TGCTTTAACATTCTCTATTGTGTCAGAAGC 7345118 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||| || || | ||||| || || || || | ||| || |||||||| |||||| || Sbjct 7345117 TTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTG 7345060 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||||||||||| | || || ||| ||| || |||||||| ||||| | Sbjct 7345520 TTCCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7345461 Query 44169 C--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| | | || || || || || || |||||||||||||||||||| |||| Sbjct 7345460 AAAGAGTT--CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 7345403 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||| || ||||| ||||| |||| | ||| |||| ||||||| | Sbjct 7345402 AGGAATACCCTCTTTTTCATGGATCTT-AGCTTTCACATTCTCTATTGTGTCGGGAACAT 7345344 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| ||||| | || || || || || || || |||| ||||| Sbjct 7345343 CAACTTCCAAGGTAATGGCTTTACCAGTAAGCGTTTTAACAGAGATCTGCAT 7345292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359965791168753