Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq41 158 3e-33 seq1 158 3e-33 >seq41 Length=919255 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || ||||| ||||| || || || || || ||| || || Sbjct 762759 CAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCCGAT 762700 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 762699 ACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAACAA 762640 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || ||||| || ||||||||| | || || | |||||||| | Sbjct 762639 AGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAATATT 762580 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || ||||||||| Sbjct 762579 CAAAAGGAATCGACTCTTCATCTTGTT 762553 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || ||||||||||| || || || || || ||| || || Sbjct 762531 CAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCTGAT 762472 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 762471 ACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAG 762412 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| || ||||| | |||||||| | || ||| | ||||| || | Sbjct 762411 AGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAATATA 762352 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||||||| |||||||||| Sbjct 762351 CAAAAGGAATCAACCTTGCATCTTGT 762326 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || ||||||||||| ||||| || || || ||| || || Sbjct 762987 CAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCGAT 762928 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 762927 ACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAACAA 762868 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| || || ||||| ||| | || || |||||||||| | Sbjct 762867 AGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAATATT 762808 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || |||||||| Sbjct 762807 CAAAAGGAATCGACTCTTCATCTTGT 762782 >seq1 Length=17153651 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | ||||| ||||| || || || || || ||| || ||| Sbjct 7345067 CAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCTGAC 7345126 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| || |||||||| || || ||||| |||||||| Sbjct 7345127 ACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAG 7345186 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||||| |||||| | ||||||||| || Sbjct 7345187 CGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGATTATAACATC 7345246 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| || ||| ||| | || |||||||| Sbjct 7345247 CAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACT 7345281 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || ||||| || || || ||| | || ||| | || || || | ||||| || ||| Sbjct 7345304 GTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCCCGACACAATAGAG 7345363 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || ||| ||||| || || ||||| || || ||||| |||||||| || | ||| Sbjct 7345364 AATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCAGCAGCGTTTGATC 7345423 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || || ||||| || ||||||||||| |||||| | ||||||||| |||| ||||| Sbjct 7345424 TTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATCCAGAAAGAG 7345483 Query 178113 TCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| ||| | || |||||||| Sbjct 7345484 TCCACACTCCATTTAGTGTTGAGACT 7345509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203644693481146