Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq237220 531 6e-146 seq562919 125 8e-24 seq601675 105 8e-18 seq61515 84.2 3e-11 >seq237220 Length=3575 Score = 531 bits (588), Expect = 6e-146 Identities = 1177/1753 (67%), Gaps = 32/1753 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || || | ||| ||||| || ||||||| ||| | ||||| |||||| Sbjct 2441 GCTGGTTTTGTTCGCAAATAATACATCCCTGTTTTTAAACCCATTTTCCATGAATAAAAA 2382 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| |||| || ||| |||| || || | ||| ||||| | |||||||||| Sbjct 2381 TGAATAGAAGTTAACTTCCCGTAATTCGGCTCAGCAACATGTATATTAAAAGATTGACTT 2322 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || ||||| | || |||||||||| ||| | || || || ||||||| Sbjct 2321 TGATCAATAAAAGCTCCACGATCAGCAGCCATTTGTATTGTTGTTTTGACTGAAATTTCC 2262 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGA 53064 |||| || ||||| || || | || | ||| || | || |||| || ||||| Sbjct 2261 CAAACTGTCTTATATAAGTCTCGTATT-TCTGTAGGTATACTTTCGATATTTTGTATAGA 2203 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| || ||||| ||| || || || |||| |||||| | | || || | Sbjct 2202 TCCATTATTGTGTATAATGAGATTTTTCATTTCCTCATCCCATAAATCTGCTTCTGTCAG 2143 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGT 53181 | | | ||| | ||| |||| || ||||||||||||||||| || || ||| || Sbjct 2142 ATCACGAAGCAAATGGTGATTTACAACTTGAAATTCTCCAGATAAAACACGTCTTTGA-- 2085 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 ||||||||| || | ||||| | ||| ||||||||||| ||||| || || ||||| Sbjct 2084 -TAAATATTAGAAGTGAAAGGTTCAAAAGATTCATTATTTCCTAAAATCTGGGCTGTTGA 2026 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTA 53299 ||||| ||||| ||||| | ||| | | ||| | ||| || ||| | | || || Sbjct 2025 GGCAGTGGGCATTGGTGCTATCAAAAGAGAATTGCGAAGGCC--ATGCTTAGCAATGTTT 1968 Query 53300 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359 | ||||| || ||| | ||| | ||| | || ||| Sbjct 1967 TTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTGGATTTTTATTCCACATTTCGTACTGT 1908 Query 53360 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419 | ||||| ||| || ||| | ||||| ||||| ||| | ||| || ||| Sbjct 1907 AATATACCTAGACTTGCAGGGCTCCCTTCGTATGTTTCGTACACTCCATACTTTTCTGCT 1848 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 53479 | ||||||||| || |||||||| || || ||||| ||||| || || | | |||||| Sbjct 1847 AATTCACAACTTGCTTCTAATGCTCCATAGTAAATAGTTTCAAATATTTGTTGATTTAGT 1788 Query 53480 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 53539 | ||||| | || || | || || | | |||||| || || || | ||| Sbjct 1787 TTAATAGCTTCTGGACTTTCGTAAGGTAAACGCATTAAAATAAAAGCATCAGCAAGACCT 1728 Query 53540 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 53599 |||||||| || || ||||||| ||| || ||| || ||| ||||| |||| |||| Sbjct 1727 TGAACACCTATTCCAATAGGTCGATGCCTAAAATTGGATTTTTTTGCTTCCGGAACAGGA 1668 Query 53600 TAATAATTAATATCTATAATTTTATT-GAGGTTTCTG--ACAATTACTTTGACCACATCC 53656 |||||||| | || || |||||||| | |||||| ||| | ||| || || Sbjct 1667 TAATAATTTACGTCAATGATTTTATTCAAATTTTCTGTTACAGT---TTTAGTAACTTCT 1611 Query 53657 TTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGA 53712 || | ||| ||||| | | |||| ||| | |||||||| || | |||||||| Sbjct 1610 TTTAATTTCGCAAAATTATATGTTTTGT-TATCATTAACAAACATATTTAGGGCAATAGA 1552 Query 53713 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 53772 || | || || || || || |||| | || | | ||| || ||| |||||||| || Sbjct 1551 AGCTAAGTTGCATACTGCCACTTCATCATCAGATGTAAATTCTACTATTTCAGTGCACAG 1492 Query 53773 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 53832 |||||||| || ||||| |||||||||| |||||||| ||| | ||||| | ||| || Sbjct 1491 GTTACTACATTTAATGGTACCTAAATTTTTCTGATTACTTTTTCTATTACATGAATCTTT 1432 Query 53833 ATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGAC 53892 | | | ||| |||| |||||||| || | || | |||||| || |||||||| | || Sbjct 1431 AAATAACATGTATGGAGTACCAGTCTCTACTTGAGCTTCTATTATTGCTTTCCAAAGTAC 1372 Query 53893 ACGAGC-CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTT 53951 | || ||| || | | | |||| |||||| |||| || | ||| || || Sbjct 1371 TTGTGCTCTTACTTGTTTA-ATAAATCTATTTTCTTTTTCATAGGTTTCATATAAGGATT 1313 Query 53952 CAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 54011 |||| || | ||||||| | | || ||||| || || | |||||||| | | || Sbjct 1312 CAAATTCTTTTCCCCAACAGTCAGCTAACCCAGGGCAATCGTGAGGACACATAAGGGTCC 1253 Query 54012 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 54071 | | || |||| | |||| |||||| || |||||||| ||||| | || ||| | Sbjct 1252 ATACGCCATCATTTTCAACTCTTTTCATGAAAAGATCAGGTATCCACAATGCATAAAAAA 1193 Query 54072 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 54131 | || |||| | ||| || ||||| || || || || | ||| | ||| | | | Sbjct 1192 GTTCCCTGGCACGTACTTCTTCTTTTCCAGTGTTTTTCTTTAAATCTAAGAATTCAAATA 1133 Query 54132 TATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCT 54191 |||| | |||||| ||||| || || | | | | | ||||| || || || ||||| | Sbjct 1132 TATCGGCATGCCATGGTTCTAAATAGACTGCAAAAGCACCAGGGCGCTTATTACCTCCTT 1073 Query 54192 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 54251 |||| | |||||||| || ||||| ||||||| |||||||| | || |||||| || Sbjct 1072 GATCAACATATCTAGCTGTATTATTGTAAACTCGTAACATTGGTACAAGACCATTTGACA 1013 Query 54252 CACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT--AATTGATAGACC 54309 ||||||| || || | ||||| | || | || | ||| | | | || | ||| Sbjct 1012 CACCATTTGTTCCTGCTATATAAGTACCTTTAGCCCTTATA-CAGTGGACATG-GACACC 955 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || ||||| |||||| || || || || | ||||| ||||| || || || || Sbjct 954 AATTCCACCTGCAGATTTAGATATCAAAGCACACTGCTTTAAGGTATCGTAAATCCCTTC 895 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 ||| |||||||| |||| | ||||||||| || | || | || |||| | Sbjct 894 TATGCTATCATCTTTCATAGCTATTAGAAAACATGACGATAGCTGAGGGCGTGGAGTTGC 835 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 || ||||||||||| || || || || |||| |||||||||| ||| || || Sbjct 834 AGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAATATTTCTCAGAAAGTAAATTATATGT 775 Query 54490 CTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549 | || |||| || ||||| ||||||||| | | || | ||| ||||| || Sbjct 774 ATTTATGGCTGCATCAATATCTTCACCATGAATTCCAATGGACACTCTCATCAACATATG 715 Query 54550 CTGAGGTCTTTCA 54562 ||||||| |||| Sbjct 714 TTGAGGTCGTTCA 702 >seq562919 Length=404 Score = 125 bits (138), Expect = 8e-24 Identities = 146/196 (74%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || |||||||| ||||| || || | |||||| ||||| || ||||| ||||| || Sbjct 230 AATGTGAGTCCTGGCATAAGACCCCTCTTTTTCAGCCAGAAGATGGAAGCAAAACTGCCC 171 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || ||||||||||| || |||||||||| || |||||| || || | || | Sbjct 170 GAGAAAAATATTCCTTCTACAGCTGCAAAGGCAACAATTCTTTCACC--AAATGTTGCAG 113 Query 24306 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 || || ||||||| | |||||||||| || ||||| |||||||| || | || | Sbjct 112 TCTTGCTTGCGATCCACTGTAGAGCCCAATCAGCTTTCTTCTTTACACAGGGAAGAGTTT 53 Query 24361 CTATAGCATTAAAGAG 24376 | || |||||||| || Sbjct 52 CAATGGCATTAAACAG 37 >seq601675 Length=487 Score = 105 bits (116), Expect = 8e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 |||||||| || | ||| ||||||||| ||||||| ||||| ||||| || || || Sbjct 369 TATGTATCTATAAGAAGGGAATACATTTCAGAATGAACATTTTCCATGGCTATCTGGAAG 310 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || ||||||||||| ||||| || | || |||||| |||||| || |||| ||| Sbjct 309 CCATAGAAACATCTTGCCTCAGTCACTTGAACTTCTTGTGAAAATCTCTCAACTAAGTTT 250 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 ||||| || || ||||| || ||||| || || | ||||| || || || Sbjct 249 TCATTTACAATGCCGTCGGAAGCCGCAAAGAATGCAAGAACATGCTTGATGAA 197 >seq61515 Length=491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 54777 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAAT 54836 |||||||||||||||| |||| ||||||| || | || ||||| |||| ||||||| Sbjct 412 GTTTTTTTGTTTCTTTATGTAAGTTTGATATTGCAAGCCTGGCGGCAAGAACAGCATAAT 353 Query 54837 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCG 54896 | ||||| | ||||| || || || | || || | ||| | || | || || | Sbjct 352 CTGGATGATCAGTAGTCATTGTTGCAGCAGTCTCTGCAGCAAGATTATCAAGCTCCACTG 293 Query 54897 TTGTTACTCCATTATATATTCCTTGGATAACCTT 54930 ||||||||||| || ||||| | |||||| || Sbjct 292 TTGTTACTCCAGAGTAAATTCCATTGATAACTTT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588727562712240