Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq51755 167 2e-36 >seq51755 Length=2487 Score = 167 bits (184), Expect = 2e-36 Identities = 585/900 (65%), Gaps = 35/900 (4%) Strand=Plus/Minus Query 105613 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 105672 || || |||||||| || |||||||| || || || |||| | || ||||| || Sbjct 1862 ACTCCTGTCCAGCCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCGGAACA 1803 Query 105673 CCTTGTTTCAGTA-ACGCATCGACAGCGTAGTGTGTAGTGTATAGCT--CTTCCGAGTTC 105729 ||||| |||| | | | | || | || ||| || ||||| || | ||| || | | Sbjct 1802 CCTTGGGTCAGCAGATACCT-GATACCGAAGTCGGTGGTGTA-AGTTTCCTTTGGACT-C 1746 Query 105730 CAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTA 105789 ||| || ||||| | | || || | || | | ||| ||||| || || || Sbjct 1745 CAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGTGTCGTTAGACCAGGCACCCTTG 1686 Query 105790 AAATCGTAACTCATGAG--AAATATTTTGCCTAATG-ACTTTTGCGCTTCGGCGTAGTTT 105846 || ||||||||||||| |||||| | | ||| |||| || ||||| |||||| Sbjct 1685 AAGTCGTAACTCATGACGAAAATATGATCC---ATGTACTTCTGGGCTTCCTTGTAGTTC 1629 Query 105847 ACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCG 105906 || || |||||||| |||| || || || || || | |||||| || || Sbjct 1628 ACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGTCAGCTCGTAAGTTCTACCA 1569 Query 105907 GTTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTT 105966 || | || | || || || | |||| || | || | || | | || |||| Sbjct 1568 GTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCTTTCATGAGCTGAACGTATA-- 1511 Query 105967 TTGGCGTCACCGTCCGCATCGCCCAACGACG----GGTTAGCCCCTTTGCCGCCCGGAAA 106022 | || ||||| | | ||| ||| | ||||||| ||||||||||| || || Sbjct 1510 ----CATCTCCGTCTTTAG-GACCACCGAGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAA 1456 Query 106023 CTCCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGA 106082 ||||||||| || || ||||| || ||||| ||||| ||| || || || || || || Sbjct 1455 CTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAGTCTTTCACGGA 1396 Query 106083 ATCTACAAAA-----ACGTTTCTTTTTTCAACATCG-TGCATAAAATAAAATGGGTCTGA 106136 | || ||| ||| || |||| |||| || | || | | || || || | Sbjct 1395 GCCAACGAAACGGTCACGCTTGGTTTT-----ATCGGTGAAGAAGA-AGAAGGGATCGGC 1342 Query 106137 TAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGC 106196 | |||||||| || || ||||| | || |||||| | || ||| ||| | Sbjct 1341 CAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTATTCGCTTGTTTCAACTG 1282 Query 106197 CATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGG 106256 ||||| ||| || || || ||||| || ||||||||||| | || | || ||||| || Sbjct 1281 CATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGG 1222 Query 106257 TTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCA 106316 || || | ||| ||||| |||||||| || | ||| ||||| ||||| || || |||| Sbjct 1221 CTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCA 1162 Query 106317 CGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATC 106376 || | ||||| | || ||| || || || ||| | ||| || || ||||| Sbjct 1161 TGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAACTGTCATTGATGCCATC 1102 Query 106377 GCCGCCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTT 106436 || || || || || ||||| || || | ||| || | | || || | || | Sbjct 1101 ACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCGGAACCGGGATGCG 1042 Query 106437 GTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGCGACAATTTT 106496 ||| ||||| || || | ||||| ||||| || || ||||| || | |||| ||| Sbjct 1041 GTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTAGGCGCCCACAACTTT 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424823161985015