Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq51755 293 2e-74 seq255931 118 9e-22 seq462883 114 1e-20 seq617918 105 6e-18 seq626934 104 2e-17 >seq51755 Length=2487 Score = 293 bits (324), Expect = 2e-74 Identities = 599/883 (68%), Gaps = 13/883 (1%) Strand=Plus/Minus Query 102164 ACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACGATGAGTTTGTGGGCCGCTACG 102223 || || ||||| || || |||||||| || || || || | || || | || || || Sbjct 1862 ACTCCTGTCCAGCCACGTCCGTACATAGCAACACCGACAACCAGCTTTTTGGGCGGAACA 1803 Query 102224 CCTTGGCCCGTGAGCA---ACTTCACGGCGTGGTCGGTGGTGTACAGCTCGTTGGCGTTC 102280 |||||| || |||| || | | || |||||||||||| || || | || Sbjct 1802 CCTTGG---GTCAGCAGATACCTGATACCGAAGTCGGTGGTGTAAGTTTCCTTTGGACTC 1746 Query 102281 CAACTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGTGTTGGACCACGCGCCCTTA 102340 ||| || ||||| || | |||||| | || | | ||| ||||| || ||||| Sbjct 1745 CAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAGAGTGTCGTTAGACCAGGCACCCTTG 1686 Query 102341 AAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTCACC 102400 || ||||||||||||| ||| || | ||| | | || | || || | | ||| ||||| Sbjct 1685 AAGTCGTAACTCATGACGAAAATATGATCCATGTACTTCTGGGCTTCCTTGTAGTTCACA 1626 Query 102401 ACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTTGTTCGTT 102460 || || ||||| | || | ||| || || ||||||||||| || | || Sbjct 1625 ACTTGGATCTTGTCCCAACCGGCACTGATGGCAGAGGTCAGCTCGTAAGTTCTACCAGTC 1566 Query 102461 TGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAGCAAAACAAGGTACGTGTC 102519 | |||| || || || |||| ||| || || ||||||| | || ||| || Sbjct 1565 T-CAGCCGCCAGCTCATCCAACATTTGACGTAATTCTTTCATGAGCTGAACGTATACATC 1507 Query 102520 GGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCA 102579 |||| || ||||| | ||||| ||||| |||||||| || |||||||| Sbjct 1506 TCCGTCTTTAGGACCA---CCGAGGTCAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCA 1450 Query 102580 ATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTCGAC 102639 ||| || || || || ||||| |||||||| || | || ||||| ||||| | || Sbjct 1449 ATCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAGTCTTTCACGGAGCCAAC 1390 Query 102640 AAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTCCAGC 102698 || ||| | |||||| ||| | ||| |||| || |||| || ||||||| Sbjct 1389 GAA-ACGGTCACGCTTGGTTTTATCGGTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGC 1331 Query 102699 CGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACTGGC 102758 | ||||| || || | ||| || ||| | || || | || | ||||| ||| | Sbjct 1330 CACCAATCGAAGGTAAGATCTTTAAACCAGTATTCGCTTGTTTCAACTGCATCAGCTGCC 1271 Query 102759 CAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTATGG 102818 | ||||| |||||||||||||||||||| | |||| |||||||| ||||| || | || Sbjct 1270 CGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATAATCCCTTTTGAGGCTTCTGCAGGG 1211 Query 102819 CGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCA 102878 | ||||| || |||||||||| ||||| |||||| | ||||| |||| || ||||||| Sbjct 1210 CCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTTCACGGCCGCTGCATGAACGCTGCA 1151 Query 102879 GCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAA 102938 |||| ||||||||| ||| || | ||| || | || || || || |||| Sbjct 1150 ATGCTTGAAAACTGCCTTCAATTTCTTTCAAACTGTCATTGATGCCATCACCACCACAAA 1091 Query 102939 TCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCACCGGAA 102998 |||||||||||||||| |||| ||| | |||||| || | ||| | |||||| || | Sbjct 1090 TCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCGGAACCGGGATGCGGTCCACGGGGA 1031 Query 102999 AGCCGCGGCCGTACACGCCCCACTCTACGAAATACGCGGCCAC 103041 | | ||||||||||| || ||||| || ||| |||| Sbjct 1030 ACTTTCTAGGATACACGCCCCATTCGACGAAGTAGGCGCCCAC 988 >seq255931 Length=537 Score = 118 bits (130), Expect = 9e-22 Identities = 347/529 (66%), Gaps = 7/529 (1%) Strand=Plus/Minus Query 102253 GTCGGTGGTGTACAGCTCGTTGGCGTTCCAACTGGGCGCGTACAGCGTGGTCTGGTAGCC 102312 |||||||||||| || || | ||||| || |||||||| | |||||||| || Sbjct 524 GTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCC 465 Query 102313 CAAATCCGTGTTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAG 102372 | | ||| ||||| || ||||| || ||||||||||||| ||| || | || | Sbjct 464 GAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCAT 405 Query 102373 GAACCTTTGAGCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGC 102432 | || | || || | | ||| ||||| || || ||||| | || | || || || Sbjct 404 GTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGC 345 Query 102433 GCTCGTCAGCTCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCA 102491 ||||||||||| || | || | |||| || || || |||| ||| || | Sbjct 344 AGAGGTCAGCTCGTAAGTTCTACCAGTCT-CAGCCGCCAGCTCATCCAACATTTGACGTA 286 Query 102492 ACTCTTTCAGCAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGT 102551 | || |||| | || ||| || |||| || ||||| | |||| Sbjct 285 ATTCCTTCATGAGCTGAACGTATACATCTCCGTCTTTAGGACCA---CCGAGGTCAGGGT 229 Query 102552 TGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACA 102611 | ||||| |||||||| || |||||||| || || || || || ||||| |||||||| Sbjct 228 TAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAGG 169 Query 102612 CCTGCAAAAACTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTGCATG 102670 || | || ||||| ||||| | || || ||| | |||||| ||| | | Sbjct 168 TTTGGAGGAAGTCTTTCACGGAGGCAACGAA-ACGATCACGCTTGGTTTTATCGGTGAAG 110 Query 102671 AAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGG 102730 || |||| || |||| || |||||||| ||||| || || | ||| || || | Sbjct 109 AAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAGCCAGTA 50 Query 102731 TTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCT 102779 || || | || | ||||| ||| || ||||| ||||||||||||| Sbjct 49 TTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCT 1 >seq462883 Length=292 Score = 114 bits (126), Expect = 1e-20 Identities = 177/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 29044 CTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGC 29103 ||| | | |||| || || || || || ||||||| |||| |||||| |||| | || Sbjct 292 CTGAATATAGTCACGTCCTTTCACCAGTTGCACGTATGCGCAACGGTCGAACCATCTAGC 233 Query 29104 GTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAA 29163 ||| || | |||||| |||| || ||||||||| || || || ||||| || | || Sbjct 232 GTGCTGTTCCCACGGAACGTCATCACTTTCCCAATCTTTTAGCCCTCCGTCACAATAGAA 173 Query 29164 GCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTTCGGG 29223 ||| || ||||| || ||||| || || || ||||||||||| ||||| || ||||| Sbjct 172 GCATTTAGTTTTGTCACCTTGGCCTGTATAGAAAAATCCGGCCTCCGCCAATTCCTCGGG 113 Query 29224 CCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTTCCGTGGC 29283 ||| || | | ||||| ||| |||||| | |||||||| || || | Sbjct 112 TTTCTGGCGCATACATCTCGGCCAGTCCTTGAAGGTGGCGAGCCGCGCGGCCTCGGTCGA 53 Query 29284 ATACTGCGGGTGC 29296 ||| ||| |||| Sbjct 52 GTACCGCGAGTGC 40 >seq617918 Length=543 Score = 105 bits (116), Expect = 6e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 29351 TTGCGCACAAACGGACACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCC 29410 || || ||||| |||||||| || ||||||| | ||||| | | |||||||||||| Sbjct 481 TTTCGGACAAAGGGACACTGGGGGGCCCACCTCCGATGGTCGGCAGCAGGGTCGTCGCCC 422 Query 29411 CTTACCCAATTCGTAATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCC 29470 ||||| || | || |||||||| || || || |||| |||||||||||||| || Sbjct 421 TCGACCCACCTCATGATTTCTACCTTACAGAAAGCACAGCAAACCTCGTCGCCGCGACCG 362 Query 29471 AAGTAGTAGAACCCGCTGGCGGCCATGCGGCTCGGCTCCAAAAACTGGACGGGCCA 29526 | ||||||||| ||| || ||||| | ||| ||||||| |||||||| Sbjct 361 AGGTAGTAGAATCCGTTGCGGGCCAATTGCTCCGGTGTCAAAAACGTAACGGGCCA 306 >seq626934 Length=584 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 || |||||||| ||||||||| ||||| ||||||| | || |||| || ||||||||| Sbjct 245 GGGGGCGTGGGTCTGAACCTGTGCGGCGCCAACCACCTGCTCCTGCTCGACCCGCACTGG 304 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAG 38845 |||||||| | |||| ||| ||||| ||||| || ||||| | |||||| | ||| Sbjct 305 AACCCGCAGCTCGAGCAGCAAGCGCAGGACCGAGTCTACCGCGTCGGCCAGGACAAG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418796198594708