Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq51755 194 1e-44 seq387503 82.4 6e-11 >seq51755 Length=2487 Score = 194 bits (214), Expect = 1e-44 Identities = 348/505 (69%), Gaps = 10/505 (2%) Strand=Plus/Minus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 |||||||| ||||||||||| || || |||||||| | ||||||||||| || || ||| Sbjct 1481 GGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTC 1422 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAA-----ACGTTTCTTTTTTCAACGT 97878 || ||| | || || || || || | || ||| ||| || |||| | || Sbjct 1421 CAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTT--ATCG- 1365 Query 97879 CGTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTA 97938 ||| | ||| |||| || || | || |||||||| || || ||||| | || |||| Sbjct 1364 -GTGAA-GAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTA 1307 Query 97939 GATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGT 97998 | | || ||| |||| | ||||| || || || || |||||||| || |||| Sbjct 1306 AACCAGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGT 1247 Query 97999 TCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAA 98058 |||| | || | |||||||| || || || | ||| ||||| ||||||||||| | || Sbjct 1246 TCCAGGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAA 1187 Query 98059 CTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTG 98118 | ||||| ||||| || || ||||| || || |||| |||| |||||| || ||| Sbjct 1186 CCTTGAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTT 1127 Query 98119 TTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGT 98178 ||| | ||| || || ||||| ||||| || || || ||||| ||||| | ||| | Sbjct 1126 CTTTCAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAAT 1067 Query 98179 GCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACT 98238 | | | || || | || | ||| ||||| || | | ||||| ||||| | Sbjct 1066 GAGTCAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATT 1007 Query 98239 CGACAAAGTACGCAGCGACAATTTT 98263 |||| ||||| || | |||| ||| Sbjct 1006 CGACGAAGTAGGCGCCCACAACTTT 982 >seq387503 Length=244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22146 CACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGAG 22205 ||||| || || |||||||||| ||| |||| | ||||||||||||||||| || | Sbjct 170 CACGGTTTCCATGTGCACGAATTTGGTGACAACACAAACGGTTGCACGTCGGCTGGAGCT 111 Query 22206 CATTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGGC 22265 ||||| ||||| || | || || || | |||| || |||| | | ||||| || Sbjct 110 CATTTCAATCCTGGAAAACAAGATCATGGTGGTCCCAATTCTGATGTACGCCATGTCGGT 51 Query 22266 GACTTGGGCAACATAAAGTCGGTTG 22290 ||| | || |||||| || | |||| Sbjct 50 GACCTCGGTAACATAGAGGCAGTTG 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407427803194982