Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq51755 205 9e-48 seq608441 116 4e-21 seq255931 105 7e-18 seq601675 100 3e-16 seq562919 98.7 1e-15 >seq51755 Length=2487 Score = 205 bits (226), Expect = 9e-48 Identities = 593/916 (65%), Gaps = 5/916 (1%) Strand=Plus/Minus Query 65119 GAACGGGTTGCCGTCCGCGTAGCCGGTCACGCCGGTCCAGCCGCGCCCGTACATGGCCAC 65178 |||||| || |||| |||| | || || |||||||| || |||||||| || || Sbjct 1890 GAACGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAAC 1831 Query 65179 GCCGAGCACGATCTTGTCGGCGGGCGCGCCCTGCGCCAACAGCCGGCGCACCGCGCCGTC 65238 |||| || | ||| | || || | || || | || ||| | | || ||| Sbjct 1830 ACCGACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCGAAGTC 1771 Query 65239 GGCGGTGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCCCAG 65298 || |||||| | || | || | ||| ||||| ||||| || |||||||| || || || Sbjct 1770 GGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAG 1711 Query 65299 CTCGGTGGTGGACCACGCCCCCTTGAAGTCGTAGCTCATCAAAAAGATGCGGTCGAGCGA 65358 | | | ||||| || |||||||||||||| ||||| | || || | || | | Sbjct 1710 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTA 1651 Query 65359 GCGGTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGCGCT 65418 || || | ||||| ||| || ||||||||| ||||| | |||||| Sbjct 1650 CTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGA 1591 Query 65419 GGTCAGCTCGTACGTCCTGTTGGTCTCGGCCTGCAGCTCGTCGAGCATGAGCNNNNNNNN 65478 |||||||||||| || || ||||| ||| |||||| || | ||| | Sbjct 1590 GGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTC 1531 Query 65479 NNNNNNNNNNNNCGCGTACGTTTCGCGGTCGCGCTCCGCGTCGCCCAGCAGCGGGTTGGC 65538 |||| || | ||| | | | || || ||||| || Sbjct 1530 TTTCATGAGCTGAACGTATACATCTCCGTCT---TTAGGACCACCGAGGTCAGGGTTAGC 1474 Query 65539 GCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTCCACGTCTG 65598 ||| |||||||| || |||||||| || | || | || ||||| | |||||| || || Sbjct 1473 GCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTG 1414 Query 65599 CAGAAACTcgcgcgccgactcgacgaacgcgcggcgcgcgctcgcgTCG-TGCATGTGAT 65657 || || || | | || | ||||| | ||| | | ||| || | || Sbjct 1413 GAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTGAAGAAGA- 1355 Query 65658 AAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTGCGGGTGCG 65717 | || ||||||| || |||||||| || || || || | | | | | || Sbjct 1354 AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTATTCG 1295 Query 65718 CCTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGTCA 65777 | | || | ||||||||| |||||||| || ||||| |||||| |||| | | | Sbjct 1294 CTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACGATA 1235 Query 65778 CGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCTTGAAGTCGT 65837 |||||||| |||||||||| ||||||||| || ||||| | | | ||||||||| | Sbjct 1234 ATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGTCTT 1175 Query 65838 CGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCTGT 65897 | ||||| ||| || ||||||| || | || ||||| | || || | |||| Sbjct 1174 CACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAACTGT 1115 Query 65898 CGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTTGG 65957 | |||||||| || || || || ||||| | ||||||||| |||| ||| || ||||| | Sbjct 1114 CATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGTTCG 1055 Query 65958 GCACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGACGAAGTAGG 66017 | || || | ||| |||| || | | ||||||||||| ||||||||||||| Sbjct 1054 GAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGTAGG 995 Query 66018 CGGCCACCACCTTGCC 66033 || |||| || || || Sbjct 994 CGCCCACAACTTTTCC 979 >seq608441 Length=509 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || |||||||| || | || ||||||||| | Sbjct 308 ATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTCGAAGCCTCT 367 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | |||||||| |||||||||||||| || | || ||| Sbjct 368 GATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAG 427 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | ||| || ||||| || || |||| || || | ||| |||||| Sbjct 428 CAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCCGATTACAAC 487 Query 40870 ATCCAGAAGGAGGCCACGCTGC 40891 |||||||| || | || |||| Sbjct 488 ATCCAGAAAGAATCGACTCTGC 509 >seq255931 Length=537 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 65236 GTCGGCGGTGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCC 65295 ||||| |||||| | || | || | ||| ||||| |||||||| ||||||||||| || Sbjct 524 GTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGTCC 465 Query 65296 CAGCTCGGTGGTGGACCACGCCCCCTTGAAGTCGTAGCTCATCAAAAAGATGCGGTCGAG 65355 || | | | ||||| || |||||||||||||| ||||| | || || |||| | Sbjct 464 GAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCAT 405 Query 65356 CGAGCGGTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGC 65415 | || || | ||||| ||| || ||||||||| ||||||| |||||| Sbjct 404 GTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGC 345 Query 65416 GCTGGTCAGCTCGTACGTCCTGTTGGTCTCGGCCTGCAGCTCGTCGAGCAT 65466 |||||||||||| || || ||||| ||| |||||| || | ||| Sbjct 344 AGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACAT 294 >seq601675 Length=487 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 |||||||| | | || || | ||| | || ||||||||||| || || || || || Sbjct 164 GACTGGGAAACCCTAAAAGATAGTGAGAGACACTTCATCAAGCATGTTCTTGCATTCTTT 223 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || || ||||||||| || || || || | || ||| | || | || || || || Sbjct 224 GCGGCTTCCGACGGCATTGTAAATGAAAACTTAGTTGAGAGATTTTCACAAGAAGTTCAA 283 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 ||| | ||||| | || ||||| ||||| ||||| |||||||| || || || || ||| Sbjct 284 GTGACTGAGGCAAGATGTTTCTATGGCTTCCAGATAGCCATGGAAAATGTTCATTCTGAA 343 Query 116891 ATGTATTC 116898 |||||||| Sbjct 344 ATGTATTC 351 >seq562919 Length=404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || ||||| || || | || || || || |||| || || ||||| || | | Sbjct 38 TGTTTAATGCCATTGAAACTCTTCCCTGTGTAAAGAAGAAAGCTGATTGGGCTCTACAGT 97 Query 117006 GGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||||| ||| ||| || | || || || | | || ||||| || || || || Sbjct 98 GGATCGCAAGCA-AGACTGCAACATTTGGTGAAAGAATTGTTGCCTTTGCAGCTGTAGAA 156 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || | || || ||||||||||| || |||| || ||||| || || | || || ||| Sbjct 157 GGAATATTTTTCTCGGGCAGTTTTGCTTCCATCTTCTGGCTGAAAAAGAGGGGTCTTATG 216 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || || || ||||| || ||||| || |||||||| |||| Sbjct 217 CCAGGACTCACATTCAGTAATGAGCTTATTTCCAGGGATGAGG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510885478780880