Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq51755 259 4e-64 seq608441 132 4e-26 >seq51755 Length=2487 Score = 259 bits (286), Expect = 4e-64 Identities = 664/991 (67%), Gaps = 29/991 (3%) Strand=Plus/Plus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| |||||||| ||||||||||| ||||| | ||| |||||||||| ||| Sbjct 982 AAAGTTGTGGGCGCCTACTTCGTCGAATGGGGCGTGTATCCTAGAAAGTTCCCCGTGGAC 1041 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | |||| ||||| || | ||| | || ||||||||| | ||||| || || || Sbjct 1042 CGCATCCCGGTTCCGAACCTGACTCATTTGCTTTACGGCTTCATCCCGATTTGTGGTGGT 1101 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 || |||||||| ||| | ||| | ||||||||| | |||||||| ||||| Sbjct 1102 GATGGCATCAATGACAGTTTGAAAGAAATTGAAGGCAGTTTTCAAGCATTGCAGCGTTCA 1161 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 || || || | || |||||||| |||| |||||||| ||||| || | || ||| Sbjct 1162 TGCAGCGGCCGTGAAGACTTCAAGGTTTCTATCCACGATCCCTGGGCGGCCCTGCAGAAG 1221 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868 || |||||||| | ||||| |||||||| || |||||||| ||||| || || |||||| Sbjct 1222 CCTCAAAAGGGATTATCGTCCTGGAACGAGCCCTACAAAGGTAACTTCGGGCAGCTGATG 1281 Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAAAG-TGTTCGCATCGATCGGCGGATGGACTCT 21927 |||| || ||| || |||||| | || | ||||| || || ||||| | Sbjct 1282 CAGTTGAAACAAGCGAATACT-GGTTTAAAGATCTTACCTTCGATTGGTGGCTGGACATT 1340 Query 21928 GTCCGATCCATTTTATCATATGCACGACGCCGACGTCAGACGGG--TGTTT-ATCGATTC 21984 | ||||||| || | || | | ||| || | || || | |||| | | || Sbjct 1341 GGCCGATCCCTTCT-TCTTCTTCAC--CGATAAAACCAAGCGTGACCGTTTCGTTGGCTC 1397 Query 21985 AGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTT 22044 || |||| || || | || |||||||||| || || ||| | || ||||||||||| Sbjct 1398 CGTGAAAGACTTCCTCCAAACCTGGAAGTTCTTCGATGGTGTCGATATTGATTGGGAGTT 1457 Query 22045 TCCCGGCGGCAAGGGAGCCAACCCCGACGTGGGCGACGCGGAACGCGACCGCGAAACGTA 22104 || |||||||| || || ||||| ||| | || | | || ||| || | ||| Sbjct 1458 CCCTGGCGGCAAAGGCGCTAACCCTGACCTCGGTGGTCCTAAA---GAC--GGAGATGTA 1512 Query 22105 CACGCTC--CTCCTGCAAGAGCTGCGTTTACGTTTAAACGCGCTCGGCGCCCG-CACCAA 22161 ||| || ||| || |||| | ||| | || | | ||| |||| | | || Sbjct 1513 TACGTTCAGCTCATGAAAGAATTACGTCAAATGTTGGATGAGCT-GGCGGCTGAGACTGG 1571 Query 22162 CCGATATTACGCCCTGACTTCGGCAGTGAGCGCGGGCAACGACAAGATAGCCGTCGTCAA 22221 || ||||| ||||| || || | || || || |||||||| || || || Sbjct 1572 TAGAACTTACGAGCTGACCTCTGCCATCAGTGCCGGTTGGGACAAGATCCAAGTTGTGAA 1631 Query 22222 CTATACCGAAGCGCAAAAGTATTTGGACACAATCTTTTTGATGACATACGATTTCAAGGG 22281 ||| | ||||| || ||||| |||| || || | |||| ||||| |||||||| Sbjct 1632 CTACAAGGAAGCCCAGAAGTACATGGATCATATTTTCGTCATGAGTTACGACTTCAAGGG 1691 Query 22282 AGCGTGG---AGCAACACTGAATTGGGACATCAGACCGCGCTTTTTGCGCCCACTTGGCG 22338 || ||| | | ||||| | |||||||||||||| || | || || ||||| | Sbjct 1692 TGCCTGGTCTAACGACACT---CTCGGACATCAGACCGCTCTATACGCTCCGTCTTGGAG 1748 Query 22339 TCCCGACGAACCATACTGCGCCGACCGCGCCGTA-GAGCTAT-TGCTCGGCCAGCACGTG 22396 ||| | ||| | ||| | ||||| || ||| || ||| |||| ||| || Sbjct 1749 TCCAAAGGAAACTTACACCACCGACTTCG--GTATCAGGTATCTGCTGACCCAAGGTGTT 1806 Query 22397 CCGGCCGGAAAGATTGCGCTCGGCGTCGCCATGTACGGCCGCGGATGGAGCGGCG-TCGT 22455 ||| || |||| | | |||| || || |||||||| || || |||| || | || | Sbjct 1807 CCGCCCAAAAAGCTGGTTGTCGGTGTTGCTATGTACGGACGTGGCTGGACAGGAGTTCAT 1866 Query 22456 GAGCGACGACACCGATAATCCGTTCCTCGGCGTCGCCGATGGCCCCGTGCCCGGCACTTG 22515 || | || | ||| | |||||| ||| || || ||||||| || || ||||| Sbjct 1867 GA-CTACAATGACGACATACCGTTCACCGGAGTAGCTAATGGCCCAGTTAAGGGAACTTG 1925 Query 22516 GGAAGCGGGCGTAGTGGACTATCGTCAGATC 22546 | | | ||||| ||||| ||| | ||||| Sbjct 1926 GCAGGACGGCGTGGTGGATTATAGGGAGATC 1956 >seq608441 Length=509 Score = 132 bits (146), Expect = 4e-26 Identities = 151/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599 || || ||||| || |||||||||||| ||| || ||| || || || ||||| | Sbjct 504 GTCGATTCTTTCTGGATGTTGTAATCGG--ATAATGTACGTCCGTCTTCAAGTTGTTTCC 447 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || || ||||||||||| ||||| |||||||| |||||| ||||||| || Sbjct 446 CAGCGAAAATCAGTCGCTGCTGATCTGGAGGAATGCCCTCTTTGTCTTGAATTTTTGCTT 387 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | ||| || | | ||||| || | || | ||||| || || |||| Sbjct 386 TTACATTTTCTATGGTATCAGAGGCTTCGACTTCTAATGTTATGGTTTTACCAGTGAGAG 327 Query 118720 TTTTTACAAAAATCTGCATGG 118740 |||| |||||||||||||||| Sbjct 326 TTTTAACAAAAATCTGCATGG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430272501711796