Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq51755 176 4e-39 seq462883 161 8e-35 seq255931 127 2e-24 seq617918 123 2e-23 seq191525 96.9 3e-15 >seq51755 Length=2487 Score = 176 bits (194), Expect = 4e-39 Identities = 632/980 (64%), Gaps = 15/980 (2%) Strand=Plus/Minus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 |||||||| || |||||||| || |||| |||||| || || ||| || | || || Sbjct 1955 ATCTCCCTATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACT 1896 Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATA 6490 || | ||| | ||| || |||| | || || | ||| || | ||||||||| Sbjct 1895 CCGGTGAACGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATA 1836 Query 6491 GCCACCCCCACCACCAACTTGCCACTGTTC---ACACTCTGGTTCAACAAACGCCTCAAC 6547 || || || || |||| ||| || | |||| ||| ||| || | ||| | Sbjct 1835 GCAACACCGACAACCAGCTTTT---TGGGCGGAACACCTTGGGTCAGCAGATACCTGATA 1779 Query 6548 GCAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGG 6607 | ||||| |||||||| |||| | | |||| ||||| | || |||| | || Sbjct 1778 CCGAAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGA 1719 Query 6608 TAGCCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTA 6666 | || ||| ||| | ||||| ||||||||| | ||||| |||| |||||||| | Sbjct 1718 TGTCCGAGAGT-GTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATG 1660 Query 6667 GTCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCT 6726 || | |||| ||| | ||||||| || || | |||||||| |||| | || Sbjct 1659 ATCCATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACT 1600 Query 6727 GATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTG 6786 |||||| |||| || | | | || |||| || ||||||| ||||||||||| Sbjct 1599 GATGGCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTG 1540 Query 6787 TCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGT-GTCAGCATCGCCCAACT 6845 | || || ||| ||||| || || ||| | || || | || | | || | | Sbjct 1539 ACGTAATTCTTTCATGAGCTGAAC----GTATACATCTCCGTCTTTAGGACCACCGAGGT 1484 Query 6846 TGTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACT 6905 ||| || || || || || || |||||||| |||||||| || || ||||| |||| Sbjct 1483 CAGGGTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACT 1424 Query 6906 TCCACGTCTCCAGAAACTCGCGCACGCTCTGCAC-AAACACCCGACGCTTGGCGGAGTCG 6964 |||| || | || || || |||| || |||| | |||||||| ||| Sbjct 1423 TCCAGGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTC-ACGCTTGGTTTTATCG 1365 Query 6965 TGCATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGA 7024 | | ||||||| ||| | ||||| || || || || |||| || | | | Sbjct 1364 GTGAAGAAGAAGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAA 1305 Query 7025 TTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCG 7084 | || ||||| | ||||||||| || || ||||| || || ||||||| Sbjct 1304 CCAGTATTCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTC 1245 Query 7085 TACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACT 7144 | | | | |||||||| || ||||| | ||| |||| |||||| ||| || Sbjct 1244 CAGGACGATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACC 1185 Query 7145 TTGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTTCAAACGACCCCGGCACCTGT 7204 ||||| || || ||||| ||| || | ||||| |||| ||| || | | | Sbjct 1184 TTGAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCT 1125 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 ||||| ||| |||| || || || || ||||| || | || ||||| |||||||| Sbjct 1124 TTCAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGA 1065 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | || || || || || | ||| |||| |||| | ||||| ||||| || Sbjct 1064 GTCAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCG 1005 Query 7325 ACAAAGTACGCCGCCACCAC 7344 || ||||| || |||| || Sbjct 1004 ACGAAGTAGGCGCCCACAAC 985 >seq462883 Length=292 Score = 161 bits (178), Expect = 8e-35 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| | |||||| |||| ||||||| | ||||||| ||||| || ||||| | Sbjct 87 ACTGGCCGAGATGTATGCGCCAGAAACCCGAGGAATTGGCGGAGGCCGGATTTTTCTATA 146 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | |||||||| || || ||||||||||||||||| || | ||||||||||| Sbjct 147 CAGGCCAAGGTGACAAAACTAAATGCTTCTATTGTGACGGAGGGCTAAAAGATTGGGAAA 206 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||||||||| | |||||||||||||||||||| ||||| || | Sbjct 207 GTGATGACGTTCCGTGGGAACAGCACGCTAGATGGTTCGACCGTTGCGCATACGTGCAAC 266 Query 13396 TAGTCAAGGGTAGAGACTA 13414 | || || || | ||||| Sbjct 267 TGGTGAAAGGACGTGACTA 285 >seq255931 Length=537 Score = 127 bits (140), Expect = 2e-24 Identities = 249/364 (68%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 6551 AAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGTAG 6610 ||||| |||||||| |||| | | |||| ||||| | ||||||| | |||| Sbjct 526 AAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTACAGAGCGGTCTGGTGT 467 Query 6611 CCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAGTC 6669 || ||| ||| | ||||| ||||||||| | ||||| |||| |||||||| | ||| Sbjct 466 CCGAGAGT-GTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTC 408 Query 6670 GAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTGAT 6729 | |||| ||| | ||||||| || || | |||||||| |||| ||||||| Sbjct 407 CATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGAT 348 Query 6730 GGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGTCT 6789 ||| |||| || | | | || |||| || ||||||| ||||||||||| | Sbjct 347 GGCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACG 288 Query 6790 CAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGT-GTCAGCATCGCCCAACTTGT 6848 || || ||| ||||| || || ||| | || || | || | | || | | Sbjct 287 TAATTCCTTCATGAGCTGAAC----GTATACATCTCCGTCTTTAGGACCACCGAGGTCAG 232 Query 6849 CGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCC 6908 ||| || || || || || || ||||||||||||||||| || || ||||| ||||||| Sbjct 231 GGTTAGCGCCTTTGCCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCC 172 Query 6909 ACGT 6912 | || Sbjct 171 AGGT 168 >seq617918 Length=543 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 12867 ATGTCTGACTTGCGATTGGAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCG 12926 ||| | ||| |||| ||||| | ||| |||| || ||||| ||||||| || || Sbjct 258 ATGCCCGACATGCGTCGAGAAGAGGAACGTCTGAAGACTTTTGATCAGTGGCCCGTTACG 317 Query 12927 TTTTTGTCGCCGGAAACCATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAG 12986 |||||| | ||||| |||| || || || |||||| | ||| | |||||||| Sbjct 318 TTTTTGACACCGGAGCAATTGGCCCGCAACGGATTCTACTACCTCGGTCGCGGCGACGAG 377 Query 12987 GTGCGTTGTGCGTTTTGTAAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCT 13046 || | ||||| || ||||| || || || ||| | ||| |||||||| || || ||| Sbjct 378 GTTTGCTGTGCTTTCTGTAAGGTAGAAATCATGAGGTGGGTCGAGGGCGACGACCCTGCT 437 Query 13047 GCCGACCATAAGAAGTGGGCTCCCCAATGTCCGTTTGT 13084 ||||||||| || |||||| ||||| ||||| ||||| Sbjct 438 GCCGACCATCGGAGGTGGGCCCCCCAGTGTCCCTTTGT 475 >seq191525 Length=1060 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 13531 TGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTAC 13590 |||| || || ||| | || || ||||| || || || | | |||||||||||| | Sbjct 118 TGGATGACTCTAAAATATGTAAAATATGTTATTCCGAGGAACGTAACGTGTGCTTCGTGC 177 Query 13591 CGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATGT 13650 ||||||| |||||||||||||| |||||||| ||| || || ||||||||||||| Sbjct 178 CGTGCGGCCACGTGGTGGCGTGCGCCAAGTGCGCGCTGTCCACGGACAAGTGTCCGATGT 237 Query 13651 GTCGCA 13656 |||||| Sbjct 238 GTCGCA 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391835138036173