Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq51755 250 2e-61 seq255931 127 2e-24 seq462883 102 6e-17 seq617918 95.1 9e-15 >seq51755 Length=2487 Score = 250 bits (276), Expect = 2e-61 Identities = 640/965 (66%), Gaps = 17/965 (2%) Strand=Plus/Minus Query 90990 ATAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAA 91049 ||| || || || || || | ||| || ||| |||| || || ||||| || || || Sbjct 1947 ATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACTCCGGTGAA 1888 Query 91050 ATAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACC 91109 | || | ||||| ||| || ||||||||||| || |||||||| || ||||| Sbjct 1887 CGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATAGCAACACC 1828 Query 91110 AATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCATTTGCACGGCAT-GATGC- 91167 | || | || | | ||||||||| || |||| | | | | || | Sbjct 1827 GACAACCAGCTTTTTGGGCGGAACACCTTGG---GTCAGCAGATACCTGATACCGAAGTC 1771 Query 91168 -GTGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAA 91226 |||||||| || || || |||| ||| |||||||| | || |||| || | Sbjct 1770 GGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGTCCGAG 1711 Query 91227 ATCGGTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAA 91286 | | || ||||| || || || || |||||| ||||||| | || | | || | Sbjct 1710 AGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCCATGTA 1651 Query 91287 CTTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCT 91346 ||| || || | | || | |||| || ||||||||| ||||||||| ||| || Sbjct 1650 CTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATGGCAGA 1591 Query 91347 TGTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTC 91406 |||| ||||| | |||| || | || || ||||||||||| | ||| || || Sbjct 1590 GGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTC 1531 Query 91407 TTTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGC 91466 ||| | | || |||| | | |||| ||| ||| | || | | | || ||||| Sbjct 1530 TTTCATGAGCTGAACGTATACATCTCCGTC---TTTAGGACCACCGAGGTCAGGGTTAGC 1474 Query 91467 GCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTG 91526 |||||| ||||| || || |||||||||||||| ||||| || || || ||||| ||| Sbjct 1473 GCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCAGGTTTG 1414 Query 91527 CAAAAATTCTTTAACCGAATCAACGAACACGTT---TCTTCGTTTGACATC-GTGCATAA 91582 | || ||||| || || ||||||| ||| | ||| |||| ||| ||| | || Sbjct 1413 GAGGAAGTCTTTCACGGAGCCAACGAA-ACGGTCACGCTTGGTTT--TATCGGTGAAGAA 1357 Query 91583 AATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGT 91642 | |||| || || | ||| ||||||||||| || || ||||| | |||||| | | Sbjct 1356 GA-AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAGTAT 1298 Query 91643 TGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGG 91702 | || || ||| | ||| || ||||| || ||||| ||||||||||| | | Sbjct 1297 TCGCTTGTTTCAACTGCATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAGGACG 1238 Query 91703 ATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAAT 91762 ||| || ||||| || || || | ||| ||||| |||||||| || ||||| || || | Sbjct 1237 ATAATCCCTTTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTTGAAGT 1178 Query 91763 CATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGG 91822 | || || || |||| || || ||||| || |||||| || ||| ||| | Sbjct 1177 CTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTTCAAAC 1118 Query 91823 CATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAAT 91882 || || | ||||| || || ||||| || || || ||||| | || ||| | || | Sbjct 1117 TGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGTCAGGT 1058 Query 91883 TTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGT 91942 | || | ||| | ||| | || || || | |||||||||||||| || |||| Sbjct 1057 TCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGACGAAGT 998 Query 91943 ACGCG 91947 | ||| Sbjct 997 AGGCG 993 >seq255931 Length=537 Score = 127 bits (140), Expect = 2e-24 Identities = 275/405 (68%), Gaps = 11/405 (3%) Strand=Plus/Minus Query 91234 TTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTGT 91293 || ||||| || || || || |||||| ||||||| | || | || |||| || Sbjct 454 TTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGGTCCATGTACTTCTGG 395 Query 91294 GCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAAT 91353 || | | || | |||| || ||||||||| ||||||| | ||| || |||| Sbjct 394 GCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCGCTGATGGCAGAGGTCAGC 335 Query 91354 TCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTTAGC 91413 ||||| | |||| || | || || ||||||||||| | ||| || || || | Sbjct 334 TCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGTAATTCCTTCATG 275 Query 91414 AAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTTA 91473 | || |||| | | |||| ||| ||| | || | | | || ||||||||||| Sbjct 274 AGCTGAACGTATACATCTCCGTC---TTTAGGACCACCGAGGTCAGGGTTAGCGCCTTTG 218 Query 91474 CCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAAT 91533 ||||| || || ||||| |||||||| ||||| || || || ||||| ||| | || Sbjct 217 CCGCCAGGGAACTCCCAGTCAATATCGACACCATCGAAGAACTTCCAGGTTTGGAGGAAG 158 Query 91534 TCTTTAACCGAATCAACGAACACGTT---TCTTCGTTTGACATC-GTGCATAAAATAGAA 91589 ||||| || || ||||||| ||| | ||| |||| ||| ||| | || | |||| Sbjct 157 TCTTTCACGGAGGCAACGAA-ACGATCACGCTTGGTTT--TATCGGTGAAGAAGA-AGAA 102 Query 91590 CGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAA 91634 || || | ||| ||||||||||| || || ||||| | ||||| Sbjct 101 GGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAA 57 >seq462883 Length=292 Score = 102 bits (112), Expect = 6e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 20110 ATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAACGTGCGTGTTG 20169 ||| ||||| ||||| || || ||| |||| | || ||||| | ||||| || Sbjct 286 ATAGTCACGTCCTTTCACCAGTTGCACGTATGCGCAACGGTCGAACCATCTAGCGTGCTG 227 Query 20170 TTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAATAAAAACACAA 20229 |||||| |||| ||||||| ||||||||||||| || || || | ||||| || || Sbjct 226 TTCCCACGGAACGTCATCACTTTCCCAATCTTTTAGCCCTCCGTCACAATAGAAGCATTT 167 Query 20230 AGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTCATCGGG 20283 |||||| ||||| | ||||| ||||||| || || |||||||| ||||| Sbjct 166 AGTTTTGTCACCTTGGCCTGTATAGAAAAATCCGGCCTCCGCCAATTCCTCGGG 113 >seq617918 Length=543 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20411 AAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCTTCTTGCCAA 20470 || ||||| || || ||||| | | || || || ||||||||||| || ||| Sbjct 472 AAGGGACACTGGGGGGCCCACCTCCGATGGTCGGCAGCAGGGTCGTCGCCCTCGACCCAC 413 Query 20471 TGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCCAAATAATAG 20530 ||| ||||| || || || || ||||||| || ||||| |||| || | || ||| Sbjct 412 CTCATGATTTCTACCTTACAGAAAGCACAGCAAACCTCGTCGCCGCGACCGAGGTAGTAG 353 Query 20531 AACCCGTTGGTCGCCATTTGCTCAGGTGTTAAAAATGTTACGGGCCAGTTTACAAAAGTG 20590 || |||||| |||| |||||| ||||| ||||| || |||||||| | ||||||| Sbjct 352 AATCCGTTGCGGGCCAATTGCTCCGGTGTCAAAAACGTAACGGGCCACTGATCAAAAGTC 293 Query 20591 GTTAAACGTACGGCTTC 20607 | | |||| | |||| Sbjct 292 TTCAGACGTTCCTCTTC 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376232951608185