Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq51755 221 1e-52 seq26808 91.5 1e-13 >seq51755 Length=2487 Score = 221 bits (244), Expect = 1e-52 Identities = 636/969 (66%), Gaps = 11/969 (1%) Strand=Plus/Minus Query 35879 ATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACG 35938 |||| || || || |||||||||| | ||| || ||| | | || || ||||| Sbjct 1955 ATCTCCCTATAATCCACCACGCCGTCCTGCCAAGTTCCCTTAACTGGGCCATTAGCTACT 1896 Query 35939 CCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATT 35998 || |||| || |||| ||||||| || || || ||||| || || |||||||| Sbjct 1895 CCGGTGAACGGTATGTCGTCATTGTAGTCATGAACTCCTGTCCAGCCACGTCCGTACATA 1836 Query 35999 GCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCACGGCC 36058 || || || | || || ||||| || || | ||| | |||| | | | Sbjct 1835 GCAACACCGACAACCAGCTTTTTGGGCGGAACACCTTGGGTCAGCAGATACCTGATACCG 1776 Query 36059 ACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGA 36118 | || || |||||| | ||| || || |||| | | | |||| || || |||||||| Sbjct 1775 AAGTCGGTGGTGTAAGTTTCCTTTGGACTCCAAGACGGAGCGTATAGAGCGGTCTGATGT 1716 Query 36119 CCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCT 36178 |||||| | |||||||| || || ||||| || |||||||| |||||||| | ||| Sbjct 1715 CCGAGAGTGTCGTTAGACCAGGCACCCTTGAAGTCGTAACTCATGACGAAAATATGATCC 1656 Query 36179 AAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATC 36238 | |||| || ||| | ||| || || | ||||||||| || || || || Sbjct 1655 ATGTACTTCTGGGCTTCCTTGTAGTTCACAACTTGGATCTTGTCCCAACCGGCACTGATG 1596 Query 36239 GCTGTGGTGAGTTCTAAAGTACGATTCGTTTGTATTTGAACTTGATCGAGCATGGCGCGC 36298 || | ||| || || |||| | | || | | | ||| | ||| || Sbjct 1595 GCAGAGGTCAGCTCGTAAGTTCTACCAGTCTCAGCCGCCAGCTCATCCAACATTTGACGT 1536 Query 36299 AATTCGCCCAATAAAGCGATATACGTGTTATTGTC-GCGTTCCACATCGCCAACGTTTGG 36357 ||||| || | | | |||| | | || | || | | || | || || Sbjct 1535 AATTCTTTCATGA----GCTGAACGTATACATCTCCGTCTTTAGGACCACCGAGGTCAGG 1480 Query 36358 ATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCA 36417 || |||||||||||||| || || |||||||||||||||| || ||||| || ||||| Sbjct 1479 GTTAGCGCCTTTGCCGCCAGGGAACTCCCAATCAATATCGACACCATCGAAGAACTTCCA 1420 Query 36418 TGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATCG-TGCA 36476 || | || || |||||| | || ||| | ||| | |||| || | Sbjct 1419 GGTTTGGAGGAAGTCTTTCACGGAGCCAACGAAACGGTCACGCTTGGTTTTATCGGTGAA 1360 Query 36477 TATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGG 36536 | || |||||||||||| || |||||| || || || || | || | |||| | | Sbjct 1359 GAAGA-AGAAGGGATCGGCCAATGTCCAGCCACCAATCGAAGGTAAGATCTTTAAACCAG 1301 Query 36537 GATTGGCCAATTTTG-CTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCAT 36595 ||| || ||| |||| || | || || || || ||||||||||| |||||||| Sbjct 1300 TATTCGCTTGTTTCAACTGC-ATCAGCTGCCCGAAGTTACCTTTGTAGGGCTCGTTCCAG 1242 Query 36596 G-CGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTT 36654 | || ||| ||| |||| || || || || |||||||| |||||||| || ||||| || Sbjct 1241 GACGATAATCCCT-TTTGAGGCTTCTGCAGGGCCGCCCAGGGATCGTGGATAGAAACCTT 1183 Query 36655 AAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTT 36714 || | || | ||| ||| || | ||||| |||| |||||| || || ||| Sbjct 1182 GAAGTCTTCACGGCCGCTGCATGAACGCTGCAATGCTTGAAAACTGCCTTCAATTTCTTT 1123 Query 36715 TAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGCGA 36774 |||||||| || || || ||||| || |||||||| || || ||||| | | || | Sbjct 1122 CAAACTGTCATTGATGCCATCACCACCACAAATCGGGATGAAGCCGTAAAGCAAATGAGT 1063 Query 36775 AAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCGAC 36834 |||||||| || | ||||||||| || || | || |||||||||||||| Sbjct 1062 CAGGTTCGGAACCGGGATGCGGTCCACGGGGAACTTTCTAGGATACACGCCCCATTCGAC 1003 Query 36835 AAAATAGGC 36843 || ||||| Sbjct 1002 GAAGTAGGC 994 >seq26808 Length=8541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 24825 TAACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGA 24884 ||||| ||||||||||| || |||||| | || || || || || || | || || || Sbjct 7375 TAACACAATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGA 7434 Query 24885 ATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGT 24944 | | ||||| | | |||| ||| || | |||||| | || ||||| | ||| Sbjct 7435 AGCTTCCGACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCC 7494 Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 ||||| |||||| | || | ||| || |||||| | |||||| | ||| | || Sbjct 7495 AGACCAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGA 7554 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCA-AT 25063 || | || |||||||| |||| ||||||||||| || || | | |||||| | || Sbjct 7555 CTATAATATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGGTAATAT 7614 Query 25064 CAATT 25068 |||| Sbjct 7615 AAATT 7619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414873435692960