Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombyx_20huttoni_20[genbank_20GCA_5F002197625.1_202017-06-19] 672,913 sequences; 450,338,996 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq237220 511 4e-140 seq601675 149 6e-31 seq287045 109 5e-19 seq26808 102 7e-17 seq249432 100 3e-16 seq417791 91.5 1e-13 seq417234 91.5 1e-13 seq608441 89.7 5e-13 >seq237220 Length=3575 Score = 511 bits (566), Expect = 4e-140 Identities = 1181/1774 (67%), Gaps = 15/1774 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||||||||| || || || || ||||| || || | ||||||||| || Sbjct 2471 TTATCTACAGTAAACTGTATTGCATTGGCCGCTGGTTTTGTTCGCAAATAATACATCCCT 2412 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || | |||||| ||||| | |||||||| || || || || || || ||| ||||| Sbjct 2411 GTTTTTAAACCCATTTTCCATGAATAAAAATGAATAGAAGTTAACTTCCCGTAATTCGGC 2352 Query 22226 AAGTC--CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | |||||| | || || || ||||| ||||| ||||| ||||| ||||| || | Sbjct 2351 TCAGCAACATGTATA--TTAAAAGATTGACTTTGATCAATAAAAGCTCCACGATCAGCAG 2294 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | ||| ||| | || |||||||| || ||||| || | | | || | Sbjct 2293 CCATTTGTATTGTTGTTTTGACTGAAATTTCCCAAACTGTCTTATATAAGTCTCGTATTT 2234 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 || ||||| |||||| | || | || || ||||||||||| || | |||||| | Sbjct 2233 CTGTAGGTATACTTTCGATATTTTGTATAGATCCATTATTGTGTATAATGAGATTTTTCA 2174 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | || | ||| ||| | | |||| ||| | || ||| | || || |||| Sbjct 2173 TTTCCTCATCCCATAAATCTGCTTCTGTCAGATCACGAAGCAAATGGTGATTTACAACTT 2114 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 |||| || || || || || || | ||| ||||| || || ||||| ||||| ||||||| Sbjct 2113 GAAATTCTCCAGATAAAACACGTCTTTGATAAATATTAGAAGTGAAAGGTTCAAAAGATT 2054 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 |||| ||||| | ||||| || || || || || ||||| || || | || || || | Sbjct 2053 CATTATTTCCTAAAATCTGGGCTGTTGAGGCAGTGGGCATTGGTGCTATCAAAAGAGAAT 1994 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 | | | ||| ||||| | ||| || | || | | ||||||||| | ||| | | Sbjct 1993 TGCGAAGGCCATGCTTAGCAATGTTTTTTTTTAAAGAAGTCCAGTCCCATAAATCTGTTG 1934 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGT 22703 | | || | |||||| ||||| || || | || |||| || ||||| ||||||| Sbjct 1933 GATT---TTTATTCCACATTTCGTACTGTAATATACCTAGACTTGCAGGGCTCCCTTCGT 1877 Query 22704 ACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAAT 22763 | ||||||||| ||||| | | || | ||| || || || || || || || || | Sbjct 1876 ATGTTTCGTACACTCCATACTTTTCTGCTAATTCACAACTTGCTTCTAATGCTCCATAGT 1817 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATAC 22823 | ||||| || || |||| | || | || || | |||||||| || | || Sbjct 1816 AAATAGTTTCAAATATTTGTTGATTTAGTTTAATAGCTTCTGGACTTTCGTAAGGTAAAC 1757 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 |||| | | || || || || | ||| ||||| ||||| || || ||||| | | | Sbjct 1756 GCATTAAAATAAAAGCATCAGCAAGACCTTGAACACCTATTCCAATAGGTCGATGCCTAA 1697 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 ||| || |||||| || || | |||||| |||| || || || | ||||| | Sbjct 1696 AATTGGATTTTTTTGCTTCCGGAACAGGATAATAATTTACGTCAATGATTTTATTCAAAT 1637 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGT- 23002 || || ||| |||| || | |||| | || | | || | Sbjct 1636 TTTCTGTTACAGTTTTAGTAACTTCTTTTAATTTCGCAAAAT--TATATGTTTTGTTATC 1579 Query 23003 -ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 ||||||| | || | ||| || || || | |||||||| ||||| || || | || Sbjct 1578 ATTAACAAACATATTTAGGGCAATAGAAGCTAAGTTGCATACTGCCACTTCATCATCAGA 1519 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 || | ||||| ||||| || || || || ||||| || || || || ||||| |||| Sbjct 1518 TGTAAATTCTACTATTTCAGTGCACAGGTTACTACATTTAATGGTACCTAAATTTTTCTG 1459 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 || ||||||| ||| || ||||| || | | |||||| || || || ||||| || || Sbjct 1458 ATTACTTTTTCTATTACATGAATCTTTAAATAACATGTATGGAGTACCAGTCTCTACTTG 1399 Query 23182 CGACTCGATGATCGCTCGCCACA-TAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTT 23240 | || || || ||| ||| | || | || || || || | | || || Sbjct 1398 AGCTTCTATTATTGCTTTCCAAAGTACT-TGTGCTCTTACTTGTTTAATAAATCTATTTT 1340 Query 23241 CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-G 23299 ||| || || ||| || || | |||||||| || ||||||| || | || | Sbjct 1339 CTTTTTCATAGGTTTCATATAAGGATTCAAATTCTTTTCCCCAACAGTCAGCTAACCCAG 1280 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 ||| || | |||||||| || |||| | ||||||||||| | | |||| ||| Sbjct 1279 GGCAATCG-TGAGGACACATAAGGGTCCATACGCCATCATTTTCAACTCTTTTCATGAAA 1221 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 ||||| |||||||| | || || || ||||| | ||| || || || ||||| || ||| Sbjct 1220 AGATCAGGTATCCACAATGCATAAAAAAGTTCCCTGGCACGTACTTCTTCTTTTCCAGTG 1161 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 || || || ||||| || || || || | || |||||||| || || | || || ||| Sbjct 1160 TTTTTCTTTAAATCTAAGAATTCAAATATATCGGCATGCCATGGTTCTAAATAGACTGCA 1101 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || || | |||||| || || ||||| || || | || || || ||||| ||| Sbjct 1100 AAAGCACCAGGGCGCTTATTACCTCCTTGATCAACATATCTAGCTGTATTATTGTAAACT 1041 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | || ||| || || ||||| || ||| | || | || || | | | |||||| Sbjct 1040 CGTAACATTGGTACAAGACCATTTGACACACCATTTGTTCCTGCTATATAAGTACCTTTA 981 Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || | | ||| || |||| ||| || || || | ||||| ||||||| || || Sbjct 980 GCCCTTATACAGTGGACATGGACACCAATTCCACCTGCAGATTTAGATATCAAAGCACAC 921 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 || || | || ||||| || || || ||||| || ||||| | || | | ||||| Sbjct 920 TGCTTTAAGGTATCGTAAATCCCTTCTATGCTATCATCTTTCATAGCTATTAGAAAACAT 861 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 || || | || | || || || || ||||| | || |||||||| || || || Sbjct 860 GACGATAGCTGAGGGCGTGGAGTTGCAGCGGAGAATAAGGTAGGGCTGGCATGAGTGAAA 801 Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839 ||| | || | || ||| || || | ||||| |||||||| || || || || || Sbjct 800 TATTTCTCAGAAAGTAAATTATATGTATTTATGGCTGCATCAATATCTTCACCATGAATT 741 Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 || |||| || | ||||| ||| | |||||||| Sbjct 740 CCAATGGACACTCTCATCAACATATGTTGAGGTC 707 >seq601675 Length=487 Score = 149 bits (164), Expect = 6e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 57645 GATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTC 57704 || ||||| |||| ||||| ||||||| | || || || || || | || || || Sbjct 164 GACTGGGAAACCCTAAAAGATAGTGAGAGACACTTCATCAAGCATGTTCTTGCATTCTTT 223 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA 57764 || || ||||| || ||||| || || || || || || ||||||||||||||||| ||| Sbjct 224 GCGGCTTCCGACGGCATTGTAAATGAAAACTTAGTTGAGAGATTTTCACAAGAAGTTCAA 283 Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 ||||| ||||| ||||| || || || || || | ||||| ||||| || ||||| ||| Sbjct 284 GTGACTGAGGCAAGATGTTTCTATGGCTTCCAGATAGCCATGGAAAATGTTCATTCTGAA 343 Query 57825 ATGTATTCGCTACTCATCGATACGTAC 57851 |||||||| || || || ||||| ||| Sbjct 344 ATGTATTCCCTTCTTATAGATACATAC 370 >seq287045 Length=1818 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 ||||||||||| || ||||| || || ||||||||||| || || || || || |||||| Sbjct 248 CATTACAACACAAAGAATCCCTTCGACTTTATGAATCTAATATCTCTGGAAGGTAAGACA 307 Query 58380 AACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||||||||||| || |||||| | ||||| ||||||| || |||||| Sbjct 308 AACTTTTTCGAGAAGAAAGTTGGAGAATACCAAAAATGTGGTGTGATG 355 >seq26808 Length=8541 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || || || | || || ||| | ||| Sbjct 7382 ATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATTACATTGGAGGTGGAAGCTTCC 7441 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| |||||| | ||| ||||||||||| | ||||| ||||| Sbjct 7442 GACACTATCGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCGCCAGACCAA 7501 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || ||||| || ||||| ||| | || ||||| Sbjct 7502 CAACGTCTCATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACTCTTTCAGACTATAAT 7561 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || |||||| | || | ||||| || || |||| Sbjct 7562 ATCCAGAAAGAATCCACACTTCATTTAGTTTTGAGACTTAGAGGAGGTA 7610 >seq249432 Length=673 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 ||||||||||| || ||||| || || || |||||||| || ||||| || || ||||| Sbjct 250 CATTACAACACAAAGAATCCCTTCGACTTCATGAATCTAATATCGCTGGAAGGTAAGACG 309 Query 58380 AACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||||||||||| || |||||| | ||||| || |||| || |||||| Sbjct 310 AACTTTTTCGAGAAGAAAGTTGGAGAATACCAGAAATGTGGTGTGATG 357 >seq417791 Length=261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 || || ||| |||| || || || ||| | |||||||| || || ||||| || |||||| Sbjct 3 TTCCCTATTCAATACCCCGATATATGGCAAATGTACAAGAAAGCTGAAGCCTCATTTTGG 62 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 |||||||||||||||||| ||||||||| Sbjct 63 ACCGTCGAAGAAGTAGACTTGTCTAAGG 90 >seq417234 Length=261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 || || ||| |||| || || || ||| | |||||||| || || ||||| || |||||| Sbjct 3 TTCCCTATTCAATACCCCGATATATGGCAAATGTACAAGAAAGCTGAAGCCTCCTTTTGG 62 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 |||||||||||||||||| ||||||||| Sbjct 63 ACCGTCGAAGAAGTAGACTTGTCTAAGG 90 >seq608441 Length=509 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| | | |||||| ||||| || || ||||| || || ||||| || || | || || Sbjct 299 GAAACCACCATGCAGATTTTTGTTAAAACTCTCACTGGTAAAACCATAACATTAGAAGTC 358 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 ||| | || || | | |||| || ||| | ||| ||||| || ||| | || Sbjct 359 GAAGCCTCTGATACCATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAGGGCATTCCT 418 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || || |||||||| || || |||||||| ||||| | |||||| || | | Sbjct 419 CCAGATCAGCAGCGACTGATTTTCGCTGGGAAACAACTTGAAGACGGACGTACATTATCC 478 Query 31364 GATTATAACATTCAAAAAGAATCGACTCT 31392 ||||| ||||| || |||||||||||||| Sbjct 479 GATTACAACATCCAGAAAGAATCGACTCT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442016874930960